Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 1000

CoverCrop_RootExudates_LCMS/MS_DIA

ABSTRACT: 19 cover crops species root exudates were characterized by LC-MS/MS in DIA mode for chemical characterization of the root exudate profiles across different agricultural crops grown hydroponically.

INSTRUMENT(S): LC: Waters Acquity UPLC system MS: Waters Xevo G2-XS Q-TOF-MS

ORGANISM(S): Cover Crops

SUBMITTER: Jessica Prenni

PROVIDER: MSV000089385 | MassIVE | Tue May 03 08:05:00 BST 2022

REPOSITORIES: MassIVE

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Cover_Crop_Root_Exudates_GC-MS

Project description:19 cover crops species root exudates were characterized by GC-MS for chemical characterization of the root exudate profiles across different agricultural crops grown hydroponically.

2022-05-02 | MSV000089355 | MassIVE

GNPS CoverCrop_RootExudates_LCMS/MS_DIA

Project description:19 cover crops species root exudates were characterized by LC-MS/MS in DIA mode for chemical characterization of the root exudate profiles across different agricultural crops grown hydroponically.

2022-05-03 | MSV000089385 | GNPS

GNPS Cover_Crop_Root_Exudates_GC-MS

2022-05-02 | MSV000089355 | GNPS

CCREM_Microbiome_LCMS_HILIC_MS1_DDA

Project description:These samples are a part of a study investigating microbial responses to cover crop root exudates. We utilized 4 cover crop species (each with unique root exudate profiles), collected the pure root exudates, and applied them to soil mirocosms. metaG, metaT, metaP, and targeted and untargeted metabolomics were applied to assess the microbial responses.

| MSV000092960 | MassIVE

CCREM_Microbiome_LCMS_Metaproteomics

| MSV000092999 | MassIVE

CoverCrop_RootExudates_LCMS/MS_DDA

Project description:cover crop (19) root exudate profiles analyzed by non-targeted LC-MS/MS DDA

2022-03-22 | MSV000089101 | MassIVE

GNPS CoverCrop_RootExudates_LCMS/MS_DDA

Project description:cover crop (19) root exudate profiles analyzed by non-targeted LC-MS/MS DDA

2022-03-22 | MSV000089101 | GNPS

GNPS - CCREM_Microbiome_LCMS_Metaproteomics

| MSV000092999 | GNPS

GNPS - CCREM_Microbiome_LCMS_HILIC_MS1_DDA

| MSV000092960 | GNPS

MicroRNAs in Pyrus stigma tissue and stigma exudates

Project description:In many plant species, flower stigma secretions are important in early stages of sexual reproduction. Previous chemical analysis and proteomic characterization of these exudates provided insights into their biological function. Nevertheless, the presence of nucleic acids in the stigma exudates has not been previously reported. Here we studied the stigma exudates of Pyrus communis, Pyrus pyrifolia and Pyrus syriaca, and showed them to harbor extracellular RNAs of various sizes. RNA sequencing revealed, for the first time, the presence of known Rosaceae mature micro-RNAs (miRs), also abundant in the stigma source tissue. Predicted targets of the exudate miRs in the Arabidopsis thaliana genome include genes involved in various biological processes. Several of these genes are pollen transcribed, suggesting possible involvement of exudate miRs in transcriptional regulation of the pollen. Moreover, extracellular miRs can potentially act across kingdoms and target genes of stigma interacting organisms/microorganisms, thus opening novel applicative avenues in HortSciences.

2023-11-15 | GSE225720 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data