Tsekitsidou_Calcineurin_P127_6600
Ontology highlight
ABSTRACT:
INSTRUMENT(S): TripleTOF 6600
ORGANISM(S): Homo Sapiens (ncbitaxon:9606)
SUBMITTER: 
Anne-Claude Gingras
PROVIDER: MSV000089647 | MassIVE | Tue Jun 14 05:39:00 BST 2022
SECONDARY ACCESSION(S): PXD034502
REPOSITORIES: MassIVE
Similar Datasets
Project description:Dataset description
This dataset consists of 8 raw MS files and associated peak lists and results files, acquired on AB Sciex TripleTOF 6600 mass spectrometer operated in Data Dependent Acquisition mode.
Samples were generated by Ema Dreseris. BioID and Mass spectrometry acquisition was performed by Cassandra Wong. Analysis was performed by Cassandra Wong, Ema Dreseris, Anne-Claude Gingras and Eric Campos.
The files are associated with a manuscript submitted for publication by Karina Silveria et al. The main goal of this paper was to investigate CYP26B1 pathogenic variants reported by two families. This dataset comprehensively maps the interactome of CYP26B1 and the associated pathogenic variants using proximity labeling and affinity purification.
Peter Kannu is the corresponding author of the manuscript (kannu@ualberta.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca)
This submission is associated with 3 Supplementary Files (in addition to this README file)
Table 1 describes the composition of this dataset
Table 2 lists all the peptide identification evidence (as per iProphet)
Table 3 lists the SAINTexpress interactions
2023-04-26 | MSV000091800 | MassIVE
Project description:This dataset consists of 18 raw MS files, acquired on TripleTOF 6600 mass spectrometer operated in Data Independent Acquisition mode. 18 raw MS files acquired in Data Dependent Acquisition mode on the same instrument in MassIVE dataset Tsekitsidou_Calcineurin_P127_6600 were used to generate a spectral library.
Samples were generated by Eirini Tsekitsidou. Sample processing and mass spectrometry acquisition was performed by Cassandra Wong. Data analysis was performed by Cassandra Wong, Eirini Tsekitsidou, Martha Cyert, and Anne-Claude Gingras.
The files are associated with a manuscript submitted for publication by Eirini Tsekitsidou et al. The main goal of this paper was to map calcineurin spatial distribution and identify its previously unknown function as a phosphatase in maintaining cilia length.
Martha Cyert is the corresponding author of the manuscript (mcyert@stanford.edu); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca)
This submission is associated with 3 Supplementary Files (in addition to this README file)
Table 1 describes the composition of this dataset
Table 2 lists all the peptide identification evidence (as per MSPLIT)
Table 3 lists the SAINTexpress interactions
2022-06-14 | MSV000089651 | MassIVE
Project description:This dataset consists of 10 raw MS files and associated peak lists and results files, acquired on AB Sciex TripleTOF 6600 mass spectrometer operated in Data Dependent Acquisition mode.
Samples were generated by Cassandra Wong. Mass spectrometry acquisition was performed by Cassandra Wong and Shen Zhang. Analysis was performed by Brett Larsen, Karen Colwill, Anne-Claude Gingras, Cassandra Wong, and Shen Zhang.
The files are associated with a manuscript submitted for publication by Shen Zhang et al. The main goal of this paper was to further optimize a no dynamic exclusion (noDE) strategy for analysis of protein-protein interactions. This dataset presents a noDE strategy which identifies more high confidence protein interactors than traditional data-dependent acquisition (DDA) with DE and data-independent acquisition (DIA) approaches.
Anne-Claude Gingras is the corresponding author of the manuscript (gingras@lunenfeld.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca)
2022-02-17 | MSV000088856 | MassIVE
Project description:This dataset consists of 10 raw MS files and associated peak lists and results files, acquired on AB Sciex TripleTOF 6600 mass spectrometer operated in Data Independent Acquisition mode.
Samples were generated by Cassandra Wong. Mass spectrometry acquisition was performed by Cassandra Wong and Shen Zhang. Analysis was performed by Brett Larsen, Karen Colwill, Anne-Claude Gingras, Cassandra Wong, and Shen Zhang.
The files are associated with a manuscript submitted for publication by Shen Zhang et al. The main goal of this paper was to further optimize a no dynamic exclusion (noDE) strategy for analysis of protein-protein interactions. This dataset presents a noDE strategy which identifies more high confidence protein interactors than traditional data-dependent acquisition (DDA) with DE and data-independent acquisition (DIA) approaches.
Anne-Claude Gingras is the corresponding author of the manuscript (gingras@lunenfeld.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca)
2022-02-18 | MSV000088862 | MassIVE
Project description:This dataset consists of 18 raw MS files and associated peak lists and result files, acquired on AB SCIEX 5600 TripleTOF mass spectrometer operated in Data Dependent Acquisition mode.
Samples were generated by Michael Aregger, affinity purification and mass spectrometric acquisition was performed by Zhen-Yuan Lin. Analysis was performed by Anne-Claude Gingras, Cassandra Wong and Zhen-Yuan Lin.
The files are associated with a manuscript submitted for publication by Michael Aregger et al. The main goal of this paper was to systematically map genetic interactions for de novo fatty acid synthesis
Jason Moffat is the corresponding author of the manuscript (j.moffat@utoronto.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca).
This submission is associated with 3 Supplementary Files (in addition to this README file)
Table 1 describes the composition of this dataset
Table 2 lists all the peptide identification evidence (as per iProphet)
Table 3 lists the SAINTexpress interactions
2020-02-25 | MSV000085005 | MassIVE
Project description:This dataset consists of 20 raw MS files and associated peak lists and result files, acquired on AB SCIEX 6600 TripleTOF mass spectrometer operated in Data Dependent Acquisition mode.
Samples were generated by Cassandra Wong. Affinity purifications, mass spectrometry acquisition and analysis were also performed by Cassandra Wong under the supervision Anne-Claude Gingras.
The files are associated with a manuscript submitted for publication by Agnieszka T. Kawashima et al. The main goal of this paper was to identify cell cycle dependent regulation of PHLPP1 and its interaction with mitotic proteins.
Alexandra Newton is the corresponding author of the manuscript (anewton@health.ucsd.edu); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca).
2020-06-24 | MSV000085628 | MassIVE
Project description:This dataset consists of 15 raw MS files and associated peak lists and results files, acquired on AB Sciex TripleTOF 6600 mass spectrometer operated in Data Dependent Acquisition mode.
Samples were generated by Camila Aprosoff. FLAG-AP and Mass spectrometry acquisition was performed by Zhen-Yuan Lin. Analysis was performed by Cassandra Wong and Boris Dyakov.
The files are associated with a manuscript submitted for publication by Camila Aprosoff et al. The main goal of this paper was to investigate SLX4 as a scaffold for DNA repair and chromatin-associated proteins. This dataset comprehensively maps the interactome of SLX4 using proximity labeling and affinity purification.
Anne-Claude Gingras is the corresponding author of the manuscript (gingras@lunenfeld.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca)
This submission is associated with 3 Supplementary Files (in addition to this README file)
Table 1 describes the composition of this dataset
Table 2 lists all the peptide identification evidence (as per iProphet)
Table 3 lists the SAINTexpress interactions
| MSV000090314 | MassIVE
Project description:This dataset consists of 10 raw MS files and associated peak lists and results files, acquired on AB Sciex TripleTOF 6600 mass spectrometer operated in Data Dependent Acquisition mode.
Samples were generated by Cassandra Wong. Mass spectrometry acquisition was performed by Shen Zhang. Analysis was performed by Brett Larsen, Karen Colwill, Anne-Claude Gingras, Cassandra Wong, and Shen Zhang.
The files are associated with a manuscript submitted for publication by Shen Zhang et al. The main goal of this paper was to further optimize a no dynamic exclusion (noDE) strategy for analysis of protein-protein interactions. This dataset presents a noDE strategy which identifies more high confidence protein interactors than traditional data-dependent acquisition (DDA) with DE and data-independent acquisition (DIA) approaches.
Anne-Claude Gingras is the corresponding author of the manuscript (gingras@lunenfeld.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca)
2022-02-17 | MSV000088858 | MassIVE
Project description:This dataset consists of 8 raw MS files, acquired on Orbitrap Fusion Lumos Tribrid mass spectrometer operated in Data Dependent Acquisition mode. Samples were generated by Kwamaa Duah and filtration was performed by Brett Larsen. Fractionation and mass spectrometry acquisition was performed by Cassandra Wong. Analysis was performed by Brett Larsen and Cassandra Wong. The files are associated with a manuscript submitted for publication by Nicola Case et al. The main goal of this paper was to identify macrophage factors that induce Candida albicans filamentation. This dataset identifies proteins present in fractions that drive C. albicans filamentation. Leah E. Cowen is the corresponding author of the manuscript (leah.cowen@utoronto.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca).
This submission is associated with 2 Supplementary Files
Table 1 describes the composition of this dataset
Table 2 lists all the peptide identification evidence (as per iProphet)
2021-05-27 | MSV000087532 | MassIVE
Project description:This dataset consists of 18 raw DDA MS files and associated peak lists and results files, acquired on timsTOF Pro2 mass spectrometer operated in Data Dependent Acquisition-PASEF (Parallel accumulation-serial fragmentation) mode. It also consists of 18 raw DIA MS files acquired in Data Independent-PASEF mode on timsTOF Pro2 mass spectrometer.
Samples were generated by Juline Poirson. Sample processing and mass spectrometry acquisition was performed by Cassandra Wong. Analysis was performed by Cassandra Wong and Juline Poirson.
The files are associated with a manuscript submitted for publication by Juline Poirson et al. The main goal of this paper was to establish a synthetic proteome-scale platform to identify human proteins that promote degradation or stabilization of a target protein in a proximity-dependent manner.
Mikko Taipale is the corresponding author of the manuscript (mikko.taipale@utoronto.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca)
This submission is associated with 3 Supplementary Files (in addition to this README file)
Table 1 describes the composition of this dataset
Table 2 lists all the peptide identification evidence (as per iProphet)
Table 3 lists the protein intensity values
2023-10-26 | MSV000093202 | MassIVE