Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Metabolomics analysis on engineered cellular and cell-free samples for muconic acid production

ABSTRACT: This data set contains mass spectrometry reads for 48 cell-free samples and 72 cellular samples from two different organisms (Saccharomyces cerevisiae and E. coli), with or without heterologous muconic acid pathway, with or without metabolic rewiring to enhance the muconic acid production, as well as associated internal and external controls. This metabolomics data set was collected for an attempt to decipher the differences and associations between in vitro and in vivo systems for metabolic engineering. The work (proposal:https://doi.org/10.46936/10.25585/60008411) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Escherichia Coli Saccharomyces Cerevisiae

SUBMITTER: Hal Alper Michael C. Jewett

PROVIDER: MSV000092596 | MassIVE | Fri Aug 04 12:41:00 BST 2023

REPOSITORIES: MassIVE

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

GNPS - Metabolomics analysis on engineered cellular and cell-free samples for muconic acid production

Project description:This data set contains mass spectrometry reads for 48 cell-free samples and 72 cellular samples from two different organisms (Saccharomyces cerevisiae and E. coli), with or without heterologous muconic acid pathway, with or without metabolic rewiring to enhance the muconic acid production, as well as associated internal and external controls. This metabolomics data set was collected for an attempt to decipher the differences and associations between in vitro and in vivo systems for metabolic engineering. The work (proposal:https://doi.org/10.46936/10.25585/60008411) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.

2023-08-04 | MSV000092596 | GNPS

Leveraging pan genomes to investigate diel transcriptomic and metabolomic responses to abiotic stress in Brassica. rapa and B. napus diversity panels.

Project description:Metabolomic analysis of the abiotic stress experiments on tissue from Brassicaceae genotypes. The work (proposal:https://doi.org/10.46936/10.25585/60001202) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.

2023-11-02 | MSV000093268 | MassIVE

Comparative and Population Genomics of Xylariaceae

Project description:We are examining the metabolites produced during co-culture of Xylariaceae fungi. The work (proposal:https://doi.org/10.46936/10.25585/60001144) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.

2023-11-02 | MSV000093277 | MassIVE

Homoserine lactone standards and heterologous expression of LuxI family synthases in E. coli

Project description:This dataset contains spectra of LuxI family synthases heterologously expressed and induced in E. coli as well as commercial homoserine lactones. The work (proposal:https://doi.org/10.46936/10.25585/60001376) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.

2023-08-04 | MSV000092598 | MassIVE

Global metabolic profile comparison between 2 ecotypes upon inoculation with Azoarcus olearius

Project description:Arabidopsis thaliana associated with Plant Growth Promoting Bacteria (PGPB) Azoarcus olearius (DQS4) innoculated with WS (Wassilewskija) and Col0 (Columbia) ecotypes. The work (proposal:https://doi.org/10.46936/10.25585/60000448) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.

2023-11-02 | MSV000093274 | MassIVE

Elucidate metabolism of bioenergy-relevant Clostridial and Streptomyces species

Project description:The goal of this study is to use both "targeted" and "untargeted" metabolomics to elucidate metabolism of Clostrial and Streptomyces species for biofuel production and plant growth promotion, respectively. For these species, we aim to improve the curation of genome-scale metabolic networks and elucidate their novel secondary metabolism to make secondary metabolites whose identities are waiting to be discovered. These metabolic networks will be used to study cell physiology, metabolism, regulation, and metabolic engineering. The work (proposal:https://doi.org/10.46936/10.25585/60000463) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.

2023-11-02 | MSV000093273 | MassIVE

Exploring the role of drought-induced plant-associated microbes in promoting plant fitness in Sorghum bicolor and Oryza sativa

Project description:We investigate the role of root-associated Actinobacteria in promoting host fitness under drought stress in two plants important to the DOE mission of sustainable biofuels: Sorghum bicolor and Oryza sativa. The work (proposal:https://doi.org/10.46936/10.25585/60001083) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.

2023-11-02 | MSV000093246 | MassIVE

Genetic, community, and ecosystem consequences of co-introduction of mycorrhizal fungiwith exotic pines

Project description:Suillus luteus mycorrhizae will be experimentally synthesized on the roots of pine seedlings, grown in aseptic conditions from seeds representing either native wild-type European genotypes of Pinus pinaster (a native host of S. luteus) or typical forestry production genotypes of P. radiata. The work (proposal:https://doi.org/10.46936/10.25585/60001406) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.

2023-11-03 | MSV000093294 | MassIVE

Unearthing the active microbes, viruses, and metabolites in dynamic-redox tropical soils with quantitative SIP and metagenomics

Project description:This research focuses on changes in the microbial communities of tropical soils during aerobic to anaerobic transitions following wetting. Of particular interest is the natural cycling of the soil microbiome through aerobic and anaerobic metabolism over relative short time periods. The work (proposal:https://doi.org/10.46936/10.25585/60000880) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.

2023-11-02 | MSV000093271 | MassIVE

Botryococcus braunii circadian time course

Project description:Botryococcus braunii is a colony forming green microalga of the order Chlorophyta. During the growth cycle of this organism, the algae synthesizes long chain liquid hydrocarbon isoprenoid compounds and sequesters them in the extracellular matrix of the colony. Metabolomics was done on samples from a circadian time series. The work (proposal:https://doi.org/10.46936/10.25585/60000723) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.

2023-11-02 | MSV000093267 | MassIVE

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data