Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

PHILIPPINE FOREST HONEY FROM PALAUI ISLAND, CAGAYAN AND LAIBAN, TANAY, RIZAL

ABSTRACT: Full-scan and tandem-MS/MS data from the metabolomics of Philippine forest honey coming from Apis cerana, Apis breviligula, and Tetragonula biroi sourced from priority conservation landscapes in Palaui Island, Cagayan Province and Brgy. Laiban, Tanay, Rizal Province. Research supported by The Forest Foundation Philippines under the Dr. Perry S. Ong Fellowship Program.

INSTRUMENT(S): Xevo G2-XS QTof

ORGANISM(S): Pterocarpus Indicus (ncbitaxon:100170) Apis Dorsata Breviligula (ncbitaxon:655644) Tetragonula (ncbitaxon:398144) Apis Cerana (ncbitaxon:7461)

SUBMITTER: Hiyas A. Junio, Ph.D.

PROVIDER: MSV000093476 | MassIVE | Thu Nov 23 17:40:00 GMT 2023

REPOSITORIES: MassIVE

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

GNPS - PHILIPPINE FOREST HONEY FROM PALAUI ISLAND, CAGAYAN AND LAIBAN, TANAY, RIZAL

Project description:Full-scan and tandem-MS/MS data from the metabolomics of Philippine forest honey coming from Apis cerana, Apis breviligula, and Tetragonula biroi sourced from priority conservation landscapes in Palaui Island, Cagayan Province and Brgy. Laiban, Tanay, Rizal Province. Research supported by The Forest Foundation Philippines under the Dr. Perry S. Ong Fellowship Program.

2023-11-23 | MSV000093476 | GNPS

Honey

Project description:Microbial diversity in honey

| PRJNA943093 | ENA

The IRE1 Pathway Regulates Honey Bee Unfolded Protein Response Gene Expression

Project description:Our molecular understanding of honey bee cellular stress responses is incomplete. Previously, we sought to identify and began functional characterization of the components of the UPR in honey bees. We observed that UPR stimulation resulted in induction of target genes upon and IRE1 pathway activation, as assessed by splicing of Xbp1 mRNA. However, were not able to determine the relative role of the various UPR pathways in gene activation. Our understanding of honey bee signal transduction and transcriptional regulation has been hampered by a lack of tools. After using RNAseq to expand the known UPR targets in the bee, we use the Drosophila melanogaster S2 cell line and honey bee trans and cis elements to investigate the role of the IRE-1 pathway in the transcriptional activation of one of these targets, the honey bee Hsc70-3 gene. Using a luciferase reporter, we show that honey bee hsc70 promoter activity is inducible by UPR activation. In addition, we show that this activation is IRE1-dependent and relies on specific cis regulatory elements. Experiments using exogenous honey bee or fruit fly XBP1S proteins demonstrate that both factors can activate the Hsc70-3 promoter and further support a role for the IRE-1 pathway in control of its expression in the honey bee. By providing foundational knowledge about the UPR in the honey bee and demonstrating the usefulness of a heterologous cell line for molecular characterization of honey bee pathways, this work stands to improve our understanding of this critical species.

2020-03-28 | GSE139368 | GEO

The habitat disruption induces immune-suppression and oxidative stress in honey bees

Project description:Background: Honey bee is a major insect used for pollination of a number of commercial crops worldwide. However, the number of managed honey bee colonies has recently declined in several countries, and a number of possible causes are proposed. Although the use of honey bees for pollination can be considered as disruption of the habitat, its effects on honey bees' physiology have never been addressed. In Japan, more than 100 thousands colonies are annually used for pollination, and intriguingly 80% of them are used in greenhouses. Recently, honey bee colonies have often collapsed when they are introduced into greenhouses. Thus, to suppress colony collapses and maintain the number of worker bees in the colonies are essential for successful long-term pollination in greenhouses and recycling honey bee colonies.

2011-05-12 | GSE29252 | GEO

Thermal stress induces tissue damage and a broad shift in regenerative signaling pathways in the honey bee intestine

Project description:Honey bee colonies in the United States have suffered from a higher than usual rate of die-off in the last few years with a complex set of interacting stresses playing a key role. With changing climate, an increase in the frequency of severe weather events, such as heat waves, is anticipated and understanding how these changes may contribute to stress in the bee is of crucial. Individual honey bees appear to have a high capacity to endure thermal stress. One reason for this high-level endurance is likely their robust HSR which contributes to thermotolerance at the cellular level. To elucidate other determinants of this resilience, we used thermal stress coupled with RNAseq and identified broad transcriptional remodeling of a number of key signaling pathways in the honey bee in response to tissue damage, including those pathways known to be involved in digestive tract regeneration in the fruit fly such as the Hippo and JAK-STAT pathways. We also observe cell death and shedding of epithelial cells, which likely leads to induction of this regenerative program. We found that thermal stress affects many of these pathways in other tissues, suggesting a shared program of damage response. In addition to allowing for important foundational characterization of damage response program in this key pollinating species, this study suggest that a robust regeneration program may also be a critical contributor to thermotolerance at the tissue level.

2021-09-08 | GSE159083 | GEO

Brain transcriptomics of honey bee parasitized by Varroa destructor or Nosema ceranae

Project description:In this study we addressed whether the transcriptome profile in the honey bee brain is similar for two major parasites of honey bee, Varroa destructor and Nosema ceranae. Honey bees parasitized by these two parasites show accelerated behavioral maturation and deficiences in orientation and learning/memory that we hoped to characterized at the transcriptomic level.

2013-09-24 | GSE41109 | GEO

honey metagenome

Project description:honey QTL-omics

| PRJNA335943 | ENA

Honey metagenome

Project description:Honey metagenome Metagenome

| PRJNA601327 | ENA

Honey metagenome

Project description:Honey ITS2 communities

| PRJNA601426 | ENA

Intronic Non-CG DNA Hydroxymethylation and Alternative mRNA Splicing in Honey Bees

Project description:Honey bee non-CG DNA hydroxymethylation is enriched in the introns, which supplements previous findings that honey bee CG DNA methylation is enriched in exons.

2013-09-19 | GSE50990 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data