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Arabidopsis thaliana photorespiration mutants

ABSTRACT: Metabolic phenotypes of a range of known photorespiratory loss-of-function mutants.

INSTRUMENT(S): 1D-GC-EI-Q-MS

SUBMITTER: Adam J. Carroll

PROVIDER: MEX36 | MetabolomeExpress | 2015-07-29

REPOSITORIES: MetabolomeExpress

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PhenoMeter: A Metabolome Database Search Tool Using Statistical Similarity Matching of Metabolic Phenotypes for High-Confidence Detection of Functional Links.

Carroll Adam J AJ Zhang Peng P Whitehead Lynne L Kaines Sarah S Tcherkez Guillaume G Badger Murray R MR

Frontiers in bioengineering and biotechnology 20150729

This article describes PhenoMeter (PM), a new type of metabolomics database search that accepts metabolite response patterns as queries and searches the MetaPhen database of reference patterns for responses that are statistically significantly similar or inverse for the purposes of detecting functional links. To identify a similarity measure that would detect functional links as reliably as possible, we compared the performance of four statistics in correctly top-matching metabolic phenotypes of ...[more]

PMID: 26284240

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