Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mobilicoccus pelagius NBRC 104925

ABSTRACT: Mobilicoccus pelagius NBRC 104925 Genome sequencing and assembly

PROVIDER: PRJDA73367 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	BAFE01.dat.gz	Other
	BAFE01.fasta.gz	Fasta.gz
	BAFE01.master.dat	Other
	BAFE01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Expression analysis of Gluconacetobacter xylinus NBRC 3288 delta-fnrG mutant

Project description:Investigation of whole genome gene expression level changes in a Gluconacetobacter xylinus NBRC 3288 delta-fnrG mutant, compared to the wild-type strain.

2021-07-16 | GSE41775 | GEO

Marinobacter pelagius

Project description:Marinobacter pelagius overview

| PRJNA457829 | ENA

Vibrio pelagius

Project description:Vibrio pelagius overview

| PRJNA856022 | ENA

Mobilicoccus pelagius

Project description:Mobilicoccus pelagius overview

| PRJNA81075 | ENA

Vibrio pelagius strain:WXL662

Project description:Vibrio pelagius strain:WXL662 Genome sequencing and assembly

| PRJNA793771 | ENA

Marinobacter pelagius strain:C7

Project description:Marinobacter pelagius strain:C7 Genome sequencing and assembly

| PRJNA805009 | ENA

Gelidibacter pelagius strain:DF109

Project description:Gelidibacter pelagius strain:DF109 Genome sequencing and assembly

| PRJNA715335 | ENA

Vibrio pelagius strain:WXL662

Project description:Vibrio pelagius strain:WXL662 Genome sequencing and assembly

| PRJNA858186 | ENA

Marinobacter pelagius strain:114J

Project description:Marinobacter pelagius 114J genome sequencing

| PRJNA456209 | ENA

Transcriptome analysis of Bacillus subtilis NBRC 16449 grown on surface of boiled soybeans under the similar condition to production of Japanese traditional soybean-fermented food "natto"

Project description:Purpose:The goals of this study are to clarify the B. subtilis NBRC 16449 response to soybeans. Methods: B. subtilis NBRC 16449 cells were aerobically cultured in liquid LB, LB solidified with agar, or on surface of boiled soybeans to logarithmic growth phase. Total RNAs were extracted from bacterial cells by Hot-Phenol method. Samples for RNA-seq were prepared according to Illmina protocol available from the manufacture. The sequence reads that passed quality filters were analyzed at the transcript isoform level with bowtie v0.11.2. Results: Using an optimized data analysis workflow, we mapped around 15 million sequence reads per sample to the whole genome of B. subtilis BEST195 and identified 4271 transcripts in B. subtilis NBRC 16449 with Bowtie aligner. Read count per genome was extracted from known gene annotations with HTSeq program. Compared the transcriptomes of B. subtilis NBRC 16449 grown on LB solidified with agar to that grown on surface of boiled soybeans, about 5% of genes showed the different expression levels.

2020-11-02 | GSE109523 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data