Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Fermentation metagenome

ABSTRACT: Stable indigo-reducing ecosystem occurs via successive marked changes in microbiota during indigo fermentation

PROVIDER: PRJDB11066 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR267036_1.fastq.gz	Fastqsanger.gz
	DRR267036_2.fastq.gz	Fastqsanger.gz
	DRR267037_1.fastq.gz	Fastqsanger.gz
	DRR267037_2.fastq.gz	Fastqsanger.gz
	DRR267038_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 38

Similar Datasets

fermentation metagenome

Project description:Isolation and characterization of indigo-reducing bacteria and analysis of microbiota from indigo-fermentation suspension

| PRJDB11981 | ENA

Analysis of natural wheat and spelt sourdough ecosystem during a 10-day spontaneous laboratory fermentation

Project description:This SuperSeries is composed of the following subset Series: GSE15686: Meta-transcriptome analysis of a natural wheat sourdough ecosystem during a 10-day spontaneous laboratory fermentation (I) GSE15691: Meta-transcriptome analysis of a natural spelt sourdough ecosystem during a 10-day spontaneous laboratory fermentation (I) GSE15692: Meta-transcriptome analysis of a natural spelt sourdough ecosystem during a 10-day spontaneous laboratory fermentation (II) GSE15693: Meta-transcriptome analysis of a natural wheat sourdough ecosystem during a 10-day spontaneous laboratory fermentation (II) Refer to individual Series

2010-07-07 | E-GEOD-15803 | biostudies-arrayexpress

fermentation metagenome

Project description:Bacterial community of Indigo reduction fluids made with different indigo sources

| PRJDB10107 | ENA

Fundicoccus fermenti strain:F-1

Project description:Novel indigo-reducing bacterial species

| PRJDB11871 | ENA

Transcriptional analysis of Lactobacillus delbrueckii subsp. delbrueckii during soy juice fermentation.

Project description:The objective of this study was to decipher the metabolism expressed by Lactobacillus delbrueckii subsp. delbrueckii CIRM-BIA865 during soy juice fermentation using transcriptomics. The whole genome was sequenced, assembled and annotated. CIRM-BIA865 was then used to ferment soy juice to produce a soy-based yogurt. Samples were analysed in kinetics during fermentation, at pH values of 6.5, 6, 5 and 4.6. RNA from CIRM-BIA865 were extracted and sequenced using paired-end Illumina. Reads were mapped using Bowtie2 on previously obtained genome of CIRM-BIA865. No mismatch were allowed. Reads mapped on CDS were counted using htseqcount.List of differentially expressed (DE) genes between two successive sampling times (determined by pH) were generated using DEseq2 with a modified t-test and a p-value adjusted by Bonferoni inferior to 0.05. Fold changes expressed how many times genes were induced along the fermentations.

2023-05-13 | E-MTAB-12095 | biostudies-arrayexpress

lambic beer fermentation ecosystem

Project description:Temporal shotgun metagenomic dissection of the lambic beer fermentation ecosystem

| PRJEB28363 | ENA

Normal, sluggish and recovered fermentation

Project description:Gene expression analysis of time course experiment of [1] a synthetic must (nitrogen-rich) fermentation by a natural wine yeast; [2] a synthetic must (nitrogen-poor) fermentation by a natural wine yeast; and [3] a synthetic must (nitrogen-poor) fermentation by a natural wine yeast, supplemented at 72 hours with 200 mg/l of nitrogen. This SuperSeries is composed of the SubSeries listed below.

2006-09-15 | GSE5842 | GEO

Sluggish Fermentation

Project description:Gene expression analysis of a time course experiment of a synthetic must (nitrogen-poor) fermentation by a natural wine yeast. Keywords: Time course

2006-09-15 | GSE5836 | GEO

Normal Fermentation

Project description:Gene expression analysis of a time course experiment of a synthetic must (nitrogen-rich) fermentation by a natural wine yeast. Keywords: Time course

2006-09-15 | GSE5835 | GEO

fermentation metagenome

Project description:Microbiota involved in fermented traditional Japanese indigo

| PRJDB8183 | ENA