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Anguilla marmorata

ABSTRACT: Population genomics of the giant eel

PROVIDER: PRJDB12405 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	DRR328923.fastq.gz	Fastqsanger.gz
	DRR328924.fastq.gz	Fastqsanger.gz
	DRR328925.fastq.gz	Fastqsanger.gz
	DRR328926.fastq.gz	Fastqsanger.gz
	DRR328927.fastq.gz	Fastqsanger.gz

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Anguilla marmorata

Project description:Identification and expression of salinity-regulated genes in marbled eel (Anguilla marmorata) based on transcriptome analysis

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Changes in ovarian gene expression profiles in maturing European eel (Anguilla anguilla)

Project description:The goal of this study was to gain a better understanding of the genetic background of gonadal maturation of the European eel and to use gene expression profiles to identify predictive markers for broodstock selection that can be measured in blood samples. To find leads for maturation markers we performed a pilot deep-sequencing transcriptome analysis of ovarian tissue derived from a yellow eel, a prepubertal silver eel and a post-spawning matured eel. Among the best leads were two key players in steroidogenesis, namely pP450c17 and liver receptor homolog-1.

2015-06-30 | GSE70381 | GEO

Changes in ovarian gene expression profiles in maturing European eel (Anguilla anguilla)

2015-06-30 | E-GEOD-70381 | biostudies-arrayexpress

Anguilla anguilla

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European eel Anguilla anguilla individuals from high (Tiber river, Italy) and low pollution (Bolsena lake, Italy) environments

Project description:An European eel-specific microarray platform was developed to identify genes involved in response to pollutants

2013-05-22 | GSE35055 | GEO

Transcription profiling of major osmoregulatory tissues of Anguilla anguilla in response to the sea water environment

Project description:The aim of this study was to use a microarray approach to screen the major osmoregulatory tissues of the eel for changes in gene expression as fish acclimate to the SW environment. The other species (few clones) were used to validate the specificity of arrays hybridizations : Of the 6144 clones spotted, 96 contained control cDNAs comprising either known eel genes implicated in osmoregulation and previously studied in our laboratory or coding regions of genes sequenced from other species (ie. Aspergillus nidulans, Arabidopsis thaliana, Pleuronectes flesus, Carcharhinus leucas, Scyliorhinus canicula, Squalus acanthias and Salmo salar). The labelled cDNA probes derived from the eel RNAs hybridised only with the spotted cDNAs from the eel clones indicating the stringency and probe specificities of the hybridisation conditions were appropriate.

2008-04-19 | E-MAXD-24 | biostudies-arrayexpress

Anguilla marmorata

Project description:Anguilla marmorata Raw sequence reads

| PRJNA275369 | ENA

Anguilla marmorata

Project description:Anguilla marmorata overview

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Transcription profiling of brain from freshwater and sea water adapted silver eels, Anguilla anguilla

Project description:We investigated salinity adaptation during the migration from freshwater to seawater of European eel (Anguilla anguilla) by examining the hypothesis that: The brain is the central organ for the co-ordination of environmental cues (day length, photoperiod, temperature and environmental salinity) with the anatomical and physiological adaptations which accompany pre-migrational morphogenesis and the osmoregulatory plasticity seen in post-migrational, salinity-adapted fish. We have characertised the mRNA expression profiles for the brains of fresh water and sea water adapted silver eel using a highly representative brain cDNA microarray. The array comprises 5760 cDNA clones from A.anguilla ranging from 0.5 -10 kb and an estimated redundancy of > 5 %.

2008-12-31 | E-MAXD-29 | biostudies-arrayexpress

Transcription profiling of brain from juvenile yellow and adult sexually mature silver eels, Anguilla anguilla

Project description:We investigated the transition from juvenile yellow to the adult sexually maturing, migrating silver eel (Anguilla anguilla) by examining the hypothesis that: The brain is the central organ for the co-ordination of environmental cues (day length, photoperiod, temperature and environmental salinity) with the anatomical and physiological adaptations which accompany pre-migrational morphogenesis and the osmoregulatory plasticity seen in post-migrational, salinity-adapted fish. We have characertised the mRNA expression profiles for the brains of fresh water, yellow and silver eel using a highly representative brain cDNA microarray. The array comprises 5760 cDNA clones from A.anguilla ranging from 0.5 -10 kb and an estimated redundancy of > 5 %.

2008-03-01 | E-MAXD-30 | biostudies-arrayexpress

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