Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Serratia rubidaea

ABSTRACT: Whole genome sequencing of Serratia rubideae, an opportunistic pathogen

PROVIDER: PRJDB1884 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR015904_1.fastq.gz	Fastqsanger.gz
	DRR015904_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Serratia liquefaciens

Project description:Whole genome sequencing of Serratia liquefaciens, an opportunistic pathogen

| PRJDB1891 | ENA

Serratia liquefaciens

Project description:Whole genome sequencing of Serratia liquefaciens, an opportunistic pathogen

| PRJDB2642 | ENA

Serratia entomophila

Project description:Whole genome sequencing of Serratia entomophila, an opportunistic pathogen

| PRJDB1763 | ENA

Serratia quinivorans

Project description:Whole genome sequencing of Serratia quinirorans, an opportunistic pathogen

| PRJDB2497 | ENA

Serratia marcescens

Project description:Whole genome sequencing of Serratia marcescens sakuensis, an opportunistic pathogen

| PRJDB2620 | ENA

Serratia quinivorans

Project description:Whole genome sequencing of Serratia proteamaculans subsp. quinovora, an opportunistic pathogen

| PRJDB2678 | ENA

Serratia marcescens

Project description:Whole genome sequencing of Serratia marcescens subsp. marcescens, an opportunistic pathogen

| PRJDB2327 | ENA

Serratia proteamaculans

Project description:Whole genome sequencing of Serratia proteamaculans subsp. proteamaculans, an opportunistic pathogen

| PRJDB2859 | ENA

Serratia rubidaea

Project description:Serratia rubidaea overview

| PRJNA172234 | ENA

Global identification of Hfq-bound RNA and transcriptional start site mapping in Serratia marcescens.

Project description:In order to identify mRNA and sRNAs associated with the RNA-binding protein Hfq in Serratia marcescens strain Db10, Hfq-bound RNA was immunoprecipitated from a strain encoding an Hfq-3FLAG fusion protein at the normal location and sequenced, in parallel with the wild type strain (no fusion) as negative control. Additionally global transcriptional start site mapping was performed on total RNA, with or without TEX treatment, isolated from wild type Serratia marcescens. The data was used to identify regions of mRNA and sRNAs associated with Hfq in this organism. Associated work in Serratia marcescens Db10, an opportunistic bacterial pathogen, has shown that Hfq is essential for virulence in several models and exerts a wide-ranging impact on the transcriptome and, particularly, genes encoding virulence factors.

2022-02-19 | GSE78185 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data