Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arcanobacterium phocae

ABSTRACT: Whole genome sequencing of Arcanobacterium phocae, an opportunistic pathogen

PROVIDER: PRJDB2275 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR015816_1.fastq.gz	Fastqsanger.gz
	DRR015816_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Arcanobacterium phocae

Project description:Arcanobacterium phocae overview

| PRJNA303909 | ENA

Arcanobacterium phocae strain:dsm 10002

Project description:Arcanobacterium phocae DSM 10002 genome sequencing

| PRJNA303742 | ENA

Streptococcus phocae

Project description:Whole genome sequencing of Streptococcus phocae, an opportunistic pathogen

| PRJDB2022 | ENA

Arcanobacterium haemolyticum

Project description:Whole genome sequencing of Arcanobacterium haemolyticum, an opportunistic pathogen

| PRJDB1966 | ENA

Arcanobacterium phocae from mink dermatitis

Project description:Epidemiological analysis of Arcanobacterium phocae isolated from mink dermatitis

| PRJEB34327 | ENA

Trueperella bernardiae

Project description:Whole genome sequencing of Arcanobacterium bernardiae, an opportunistic pathogen

| PRJDB2516 | ENA

Trueperella bernardiae

Project description:Whole genome sequencing of Arcanobacterium bernardiae, an opportunistic pathogen

| PRJDB2106 | ENA

Trueperella bernardiae

Project description:Whole genome sequencing of Arcanobacterium bernardiae, an opportunistic pathogen

| PRJDB2333 | ENA

Comparative Genomics of 42 Arcanobacterium phocae Strains.

Project description:For the last 13 years, the fur industry in Europe has suffered from epidemic spouts of a severe necrotizing pyoderma. It affects all species currently farmed for fur and causes animal welfare problems and significant losses to the farmers. The causative agent of this disease was identified as Arcanobacterium phocae. Previously, this bacterium has been isolated from seals and other marine mammals, apparently causing wound and lung infections. Attempts at antibiotic treatment have been unsuccessful and the current advice on preventing the disease is to cull all animals with clinical signs. This poses an urgent question regarding possible vaccine development, as well as the need for further understanding of the pathogenicity of this organism. This study compared the whole genomes of 42 A. phocae strains isolated from seals, blue foxes, finnraccoons, mink and otter. The sequences were created using the Illumina technology and annotations were done using the RAST pipeline. A phylogenetic analysis identified a clear separation between the seal strains and the fur-animal-derived isolates, but also indicated that the bacterium readily adapts to new environments and host species with reasonable diversity. A pan- and core-genome was created and analyzed for proteins. A further analysis identified several virulence factors as well as multiple putative and secreted proteins of special interest for vaccine development.

| S-EPMC8235330 | biostudies-literature

Arcanobacterium

Project description:Arcanobacterium sp. overview

| PRJNA188056 | ENA