Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Shewanella indica

ABSTRACT: Whole genome sequencing of Shewanella indica, an opportunistic pathogen

PROVIDER: PRJDB2314 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR015764_1.fastq.gz	Fastqsanger.gz
	DRR015764_2.fastq.gz	Fastqsanger.gz
	DRR015765_1.fastq.gz	Fastqsanger.gz
	DRR015765_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Shewanella indica

Project description:Whole genome sequencing of Shewanella indica, an opportunistic pathogen

| PRJDB2314 | ENA

Shewanella indica

Project description:Shewanella indica overview

| PRJNA671526 | ENA

Shewanella algae

Project description:Whole genome sequencing of Shewanella algae, an opportunistic pathogen

| PRJDB2419 | ENA

Shewanella algae

Project description:Whole genome sequencing of Shewanella haliotis, an opportunistic pathogen

| PRJDB2810 | ENA

Shewanella algae

Project description:Whole genome sequencing of Shewanella haliotis, an opportunistic pathogen

| PRJDB1944 | ENA

Shewanella indica strain:CNZ-1

Project description:Shewanella indica strain:CNZ-1 Genome sequencing and assembly

| PRJNA471591 | ENA

Transcriptional targets of Shewanella oneidensis HnoC (SO_2540)

2013-11-01 | GSE44689 | GEO

Transcriptional targets of Shewanella oneidensis HnoC (SO_2540)

Project description:To identify the transcriptional targets of the DNA-binding response regulator HnoC (SO_2540), mRNA transcript levels in Shewanella oneidensis were measured using whole genome microarray analysis. Transcript levels were compared between WT Shewanella oneidensis and a hnoC deletion strain. Transcript levels of a WT and hnoC deletion strain were measured after 15 hrs growth, 4 independent replicates were performed for each strain

2013-11-01 | E-GEOD-44689 | biostudies-arrayexpress

Shewanella xiamenensis

Project description:7 Shewanella xiamenensis strains whole genome sequencing

| PRJNA755833 | ENA

Constant production of FlhG ensures proper function of the flagellar counter in Shewanella putrefaciens

Project description:Purpose : Identification of the regulons directly and indirectly affected by the main regulators of flagellation in Shewanella putrefaciens CN-32 Methods : mRNA profiles were generated for Shewanella putrefaciens CN-32 samples by deep sequencing. The removal of ribosomal RNA was performed using the Ribo-Zero Bacteria Kit (Illumina) and cDNA libraries were generated with the ScriptSeq v2 Kit (Illumina) . The samples were sequenced in single end mode on an Illumina HiSeq 2500 device and mRNA reads were trimmed using the tool ‘cutadapt’ (version 3.5) with default settings and mapped to the NC_009438.1 (Shewanella putrefaciens CN-32) reference genome from NCBI using ‘bowtie2’ (version 2.3.5.1) with default settings for single-end sequencing.

2022-12-21 | GSE207531 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data