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Aliarcobacter butzleri

ABSTRACT: Whole genome sequencing of Arcobacter butzleri, an opportunistic pathogen

PROVIDER: PRJDB2599 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	DRR015909_1.fastq.gz	Fastqsanger.gz
	DRR015909_2.fastq.gz	Fastqsanger.gz

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The complete genome sequence and analysis of the human pathogen Arcobacter butzleri.

Project description:Background: The human pathogen Arcobacter butzleri is a member of the epsilon subdivision of the Proteobacteria and a close taxonomic relative of other established pathogens, such as Campylobacter jejuni and Helicobacter pylori. Here we present the complete genome sequence of the human clinical isolate, A. butzleri strain RM4018. Results: Arcobacter butzleri is a member of the Campylobacteraceae, but the majority of its proteome is most similar to those of Thiomicrospira denitrificans and Wolinella succinogenes, both members of the Helicobacteraceae. In addition, many of the genes and pathways described here, e.g. those involved in signal transduction and sulfur metabolism, have been identified previously within the epsilon subdivision only in T. denitrificans and/or W. succinogenes, or are unique to the subdivision. The analyses indicated also that a large proportion of the A. butzleri genome is devoted to growth and survival under diverse environmental conditions, with a large number of respiration-associated proteins, signal transduction and chemotaxis proteins and proteins involved in DNA repair and adaptation. To investigate the genomic diversity of A. butzleri strains, we constructed an A. butzleri DNA microarray comprising 2238 genes from strain RM4018. Comparative genomic indexing analysis of 12 additional A. butzleri strains identified both the core genes of A. butzleri and intraspecies hypervariable regions, where < 70% of the genes were present in at least two strains. Conclusion: The presence of environmentally-associated pathways and loci, as well as genes associated with virulence indicates that this free-living, water-borne organism A. butzleri can be classified rightfully as an emerging pathogen. Keywords: comparative genomic hybridization

2007-08-15 | GSE8725 | GEO

Aliarcobacter butzleri

Project description:Arcobacter butzleri from water poultry

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Aliarcobacter butzleri 7h1h

Project description:Arcobacter butzleri 7h1h genome sequencing project

| PRJNA67167 | ENA

Regulation of Energy Metabolism by the Extracytoplasmic Function (ECF) σ factors of Arcobacter butzleri

Project description:The extracytoplasmic function (ECF) σ factors are fundamental for bacterial adaptation to distinct environments and for survival under different stress conditions. The emerging pathogen Arcobacter butzleri possesses seven putative pairs of σ/anti-σ factors belonging to the ECF family. Here, we report the identification of the genes regulated by five out of the seven A. butzleri ECF σ factors. Three of the ECF σ factors play an apparent role in transport, energy generation and the maintainance of redox balance. Several genes like the nap, sox and tct genes are regulated by more than one ECF σ factor indicating that the A. butzleri ECF σ factors form a network of overlapping regulons. In contrast to other eubacteria, these A. butzleri ECF regulons appear to primarily regulate responses to changing environments in order to meet metabolic needs instead of an obvious role in stress adaptation.

2011-12-31 | GSE34089 | GEO

Aliarcobacter butzleri

Project description:Aliarcobacter butzleri Genome sequencing and assembly

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Aliarcobacter butzleri

Project description:Aliarcobacter butzleri Genome sequencing and assembly

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Aliarcobacter butzleri RM4018

Project description:Regulation of Energy Metabolism by the Extracytoplasmic Function (ECF) σ factors of Arcobacter butzleri

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Project description:Aliarcobacter butzleri Raw sequence reads