Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Aspergillus nidulans FGSC A4

ABSTRACT: Genome-wide analysis of fungal transcriptional regulation by using high-throughput DNA sequencing

PROVIDER: PRJDB4821 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR060257_1.fastq.gz	Fastqsanger.gz
	DRR060257_2.fastq.gz	Fastqsanger.gz
	DRR060258_1.fastq.gz	Fastqsanger.gz
	DRR060258_2.fastq.gz	Fastqsanger.gz
	DRR060259_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Aspergillus nidulans FGSC A4

Project description:Genome-wide analysis of fungal transcriptional regulation by using high-throughput DNA sequencing

| PRJDB4820 | ENA

Structure and function of a broad-specificity chitin deacetylase from Aspergillus nidulans FGSC A4.

Project description:Enzymatic conversion of chitin, a β-1,4 linked polymer of N-acetylglucosamine, is of major interest in areas varying from the biorefining of chitin-rich waste streams to understanding how medically relevant fungi remodel their chitin-containing cell walls. Although numerous chitinolytic enzymes have been studied in detail, relatively little is known about enzymes capable of deacetylating chitin. We describe the structural and functional characterization of a 237 residue deacetylase (AnCDA) from Aspergillus nidulans FGSC A4. AnCDA acts on chito-oligomers, crystalline chitin, chitosan, and acetylxylan, but not on peptidoglycan. The K m and k cat of AnCDA for the first deacetylation of penta-N-acetyl-chitopentaose are 72 µM and 1.4 s-1, respectively. Combining mass spectrometry and analyses of acetate release, it was shown that AnCDA catalyses mono-deacetylation of (GlcNAc)2 and full deacetylation of (GlcNAc)3-6 in a non-processive manner. Deacetylation of the reducing end sugar was much slower than deacetylation of the other sugars in chito-oligomers. These enzymatic characteristics are discussed in the light of the crystal structure of AnCDA, providing insight into how the chitin deacetylase may interact with its substrates. Interestingly, AnCDA activity on crystalline chitin was enhanced by a lytic polysaccharide monooxygenase that increases substrate accessibility by oxidative cleavage of the chitin chains.

| S-EPMC5431758 | biostudies-literature

Aspergillus nidulans FGSC A4

Project description:Transcriptional response of Aspergillus nidulans grown on high and low glucose concentrations

| PRJNA345604 | ENA

Aspergillus oryzae RIB40

Project description:Genome-wide analysis of fungal transcriptional regulation by using high-throughput DNA sequencing

| PRJDB6696 | ENA

Aspergillus nidulans FGSC A4

Project description:Aspergillus nidulans : Wild type Fructose x Xylose

| PRJNA217720 | ENA

Aspergillus nidulans FGSC A4

Project description:WGS sequencing, assembly, and annotation

| PRJNA130 | ENA

Aspergillus nidulans FGSC A4

Project description:Aspergillus nidulans FGSC A4 Transcriptome or Gene expression

| PRJNA311945 | ENA

Aspergillus nidulans FGSC A4

Project description:Aspergillus nidulans FGSC A4 genome third party annotation and reassembly

| PRJEA40559 | ENA

GNPS Aspergillus nidulans FGSC A4 in different media

Project description:Aspergillus nidulans FGSC A4 5 grown in YPD, AF6 and EG:JM media

2022-07-18 | MSV000089906 | GNPS

Suberin degradation by Aspergillus nidulans

Project description:The study aims essentially at the characterisation of suberin degradation mechanisms by Aspergillus nidulans, at a fundamental level. Suberin is an important protective barrier in plant, thus the study of its biodegradation significantly impacts on phytopatology. In addition, fungal suberin degrading enzymes might provide important insights to develop new waste management, bioremediation and biodeterioration prevention strategies.

2014-07-31 | GSE54427 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data