Lagopus muta japonica
Ontology highlight
ABSTRACT:
REPOSITORIES: ENA
Similar Datasets
Project description:Thus far, two types of Eimeria parasites (E. uekii and type B) have been morphologically identified in wild Japanese rock ptarmigans, Lagopus muta japonica. Although high prevalences were reported for these parasites, genetic analyses have not been conducted. We first clarified the phylogenetic positions of two eimerian isolates using genetic analyses of 18S rRNA and mitochondrial cytochrome c oxidase subunit I gene regions. Consequently, of 61 samples examined, 21 and 11 samples were positive for E. uekii and type B, respectively. Additionally, the infection rate increased in the summer. Molecular analyses revealed both Eimeria isolates formed their own clusters; E. uekii was included in clades of chicken Eimeria and type B was include in clades of turkey Eimeria. Based on our findings in this study and previous data, we herein propose type B as E. raichoi. These genetic data will be helpful to conduct detailed classification and understand the impact of these parasites for conservation of endangered Japanese rock ptarmigans.
| S-EPMC6034578 | biostudies-literature
Project description:The complete mitochondrial genome sequences of the two sister species, Scandinavian willow ptarmigan Lagopus lagopus and Icelandic rock ptarmigan Lagopus muta, were characterized using next-generation sequencing. The mitogenome for willow ptarmigan was 16,677?bp long, with base composition of 30.3% A, 30.8% C, 13.3% G and 25.6% T, with a GC content of 44.1%, while for rock ptarmigan mitogenome was 16,687?bp long, with base composition of 30.2% A, 30.6% C, 13.4% G and 25.8% T, and a GC content of 44.0%. Like other Galliformes species, the mitogenomes comprised of 13 protein-coding genes, 22 tRNA, 2 rRNA and 2 non-coding regions; and control region (D-loop). All genes except ND6 and 8 tRNA were encoded on the?+?strand. All protein-coding genes started with ATG, except for COX1, where a GTG codon was present in both willow ptarmigan and rock ptarmigan. Phylogenetic analysis of the two novel mitogenomes with other Galliformes species demonstrates close relationship within the Tetraoninae subfamily.
| S-EPMC7800188 | biostudies-literature
Project description:BackgroundThe Rock Ptarmigan Lagopus muta japonica lives in the alpine zones of central Japan, which is the southern limit of the global distribution for this species. This species is highly dependent on alpine habitats, which are considered vulnerable to rapid climate change. This study aimed to assess the impact of climate change on potential L. muta japonica habitat based on predicted changes to alpine vegetation, to identify population vulnerability under future climatic conditions for conservation planning. We developed species distribution models, which considered the structure of the alpine ecosystem by incorporating spatial hierarchy on specific environmental factors to assess the potential habitats for L. muta japonica under current and future climates. We used 24 general circulation models (GCMs) for 2081-2100 as future climate conditions.ResultsThe predicted potential habitat for L. muta japonica was similar to the actual distribution of the territories in the study area of Japan's northern Alps (36.25-36.5°N, 137.5-137.7°E). Future potential habitat for L. muta japonica was projected to decrease to 0.4% of the current potential habitat in the median of occurrence probabilities under 24 GCMs, due to a decrease in alpine vegetation communities. Some potential habitats in the central and northwestern part of the study area were predicted to be sustained in the future, depending on the GCMs.ConclusionsOur model results predicted that the potential habitats for L. muta japonica in Japan's northern Alps, which provides core habitat for this subspecies, would be vulnerable by 2081-2100. Small sustainable habitats may serve as refugia, facilitating the survival of L. muta japonica populations under future climatic conditions. Impact assessment studies of the effect of climate change on L. muta japonica habitats at a nationwide scale are urgently required to establish effective conservation planning for this species, which includes identifying candidate areas for assisted migration as an adaptive strategy.
| S-EPMC6617707 | biostudies-literature
Project description:Lagopus muta (Rock ptarmigan) genome, bLagMut1, alternate haplotype
| PRJNA836585 | ENA
Project description:Lagopus muta (Rock ptarmigan) genome, bLagMut1, primary haplotype
| PRJNA836583 | ENA
Project description:Preservation of indigenous gastrointestinal microbiota is critical for successful captive breeding of endangered wild animals, yet its biology is poorly understood. Here, we compared the cecal microbial composition of wild living Japanese rock ptarmigans (Lagopus muta japonica) in different locations of Japanese mountains, and the dominant cecal microbial structure of wild Japanese rock ptarmigans is elucidated. Coriobacteraceae and Lachnospraceae were the two dominant bacterial families in all samples analyzed. At the genus level, 10 genera Olsenella, Actinomyces, Megasphaera, Slackia, Cloacibacillus, Bifidobacterium,Escherichia,Dialister, Megamonas, and Bilophila were dominant. These results reveal the high level of coexistence of lactic acid bacteria (Olsenella and Bifidobacterium) and lactate-utilizing bacteria (Megasphaera). This coexistence should be taken into account for the successful breeding of captive Japanese rock ptarmigans in the national conservation program.
| S-EPMC6164970 | biostudies-literature
Project description:The Pyrenean rock ptarmigan (Lagopus muta pyrenaica) lives at one of the southernmost limits of the ptarmigan range. Their small population sizes and the impacts of global changes are limiting factors in the conservation of this threatened subspecies. An effective conservation policy requires precise basic knowledge of a species' food and habitat requirements, information that is practically non-existent for this Pyrenean population. Here, we describe the diet of a ptarmigan population in the Eastern Pyrenees, the environmental factors influencing its variability and the relationship between diet floristic composition and quality. Diet composition was determined by microhistological analysis of faeces and diet quality was estimated from free-urate faecal N content. Our results show that grouse diet is based mainly on arctic-alpine shrubs of the Ericaceae family, as well as dwarf willows (Salix spp.) and Dryas octopetala. The most frequently consumed plant species was Rhododendron ferrugineum, but its abundance in the diet was negatively related to the diet nitrogen content. Conversely, the abundance of Salix spp., grass leaves and arthropods increased the nitrogen content of the diet. Seasonality associated with snow-melting contributed the most to variability in the Pyrenean ptarmigan diet, differentiating winter from spring/summer diets. The latter was characterised by a high consumption of dwarf willows, flowers, arthropods and tender forb leaves. Geographic area and sex-age class influenced diet variability to a lesser extent. Current temperature increases in the Pyrenees due to global warming may reduce the persistence and surface area of snow-packs where preferred plants for rock ptarmigan usually grow, thus reducing food availability. The high consumption of Rh. ferrugineum characterised the diet of the Pyrenean population. Given the toxicity of this plant for most herbivores, its potential negative effect on Pyrenean ptarmigan populations should be evaluated.
| S-EPMC4749312 | biostudies-literature