Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Erwinia pyrifoliae Ep1/96

ABSTRACT: This strain will be used for comparative genome analysis

PROVIDER: PRJEA34779 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	GCA_000027265.1_sequence_report.txt	Txt

Items per page:

1 - 1 of 1

Similar Datasets

Erwinia billingiae Eb661

Project description:This strain will be used for comparative genome analysis

| PRJEA34781 | ENA

Project description:The plant pathogen Erwinia pyrifoliae has been classified as a separate species from Erwinia amylovora based in part on differences in molecular properties. In this study, these and other molecular properties were examined for E. pyrifoliae and for additional strains of E. amylovora, including strains from brambles (Rubus spp.). The nucleotide composition of the internal transcribed spacer (ITS) region was determined for six of the seven 16S-23S rRNA operons detected in these species with a 16S rRNA gene probe. Each species contained four operons with a tRNA(Glu) gene and two with tRNA(Ile) and tRNA(Ala) genes, and analysis of the operons from five strains of E. amylovora indicated a high degree of ITS variability among them. One tRNA(Glu)-containing operon from E. pyrifoliae Ep1/96 was identical to one in E. amylovora Ea110, but three tRNA(Glu) operons and two tRNA(Ile) and tRNA(Ala) operons from E. pyrifoliae contained unique nucleotide changes. When groEL sequences were used for species-specific identification, E. pyrifoliae and E. amylovora were the closest phylogenetic relatives among a set of 12 bacterial species. The placement of E. pyrifoliae distinct from E. amylovora corroborated molecular hybridization data indicating low DNA-DNA similarity between them. Determination of the nucleotide sequence of plasmid pEP36 from E. pyrifoliae Ep1/96 revealed a number of presumptive genes that matched genes previously found in pEA29 from E. amylovora and similar organization for the genes and origins of replication. Also, pEP36 and pEA29 were incompatible with clones containing the reciprocal origin regions. Finally, the ColE1-like plasmid pEP2.6 from strain Ep1/96 contained sequences found in small plasmids in E. amylovora strains IL-5 and IH3-1.

| S-EPMC134437 | biostudies-literature

Erwinia pyrifoliae

Project description:Erwinia pyrifoliae overview

| PRJNA37237 | ENA

Erwinia pyrifoliae strain:YKB12328

Project description:Erwinia pyrifoliae strain:YKB12328 Genome sequencing and assembly

| PRJNA557577 | ENA

Erwinia pyrifoliae strain:Zjy 12

Project description:Erwinia pyrifoliae strain:Zjy 12 Genome sequencing

| PRJNA269113 | ENA

Erwinia pyrifoliae strain:EpK1/15

Project description:Erwinia pyrifoliae strain:EpK1/15 Genome sequencing

| PRJNA411857 | ENA

Molecular characterization of natural Erwinia pyrifoliae strains deficient in hypersensitive response.

Project description:From necrotic tissue of a Nashi pear tree, 24 Erwinia pyrifoliae strains, found to be identical by pulsed-field gel electrophoresis analysis, were isolated. Thirteen strains were not virulent on immature pears and did not induce a hypersensitive response in tobacco leaves. The defective gene hrpL was complemented with intact genes from E. pyrifoliae and Erwinia amylovora.

| S-EPMC152409 | biostudies-literature

Erwinia pyrifoliae DSM 12163

Project description:Erwinia pyrifoliae DSM 12163 genome sequencing project

| PRJEA37877 | ENA

Xanthomonas campestris pv. campestris str. B100

Project description:Used for comparative genome analysis

| PRJNA29801 | ENA

Francisella tularensis B-SA

Project description:Strain used for comparative genome analysis

| PRJNA30631 | ENA