Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Class 1 integrons in WWTPs

ABSTRACT: High throughput analysis of class 1 integron gene casettes in wastewater environments

PROVIDER: PRJEB12330 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR1201290_1.fastq.gz	Fastqsanger.gz
	ERR1201290_2.fastq.gz	Fastqsanger.gz
	ERR1201300_1.fastq.gz	Fastqsanger.gz
	ERR1201300_2.fastq.gz	Fastqsanger.gz
	ERR1201291_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 32

Similar Datasets

Pseudomonas fulva

Project description:class 3 integron

| PRJDB6447 | ENA

Lsh/HELLS is required for B lymphocyte development and immunoglobulin class switch recombination

Project description:We report here high-throughput sequencing analyses of class switch recombination junctions in Lsh deficient B cells with reduced capacity of class switch recombination compared to control B cells.

2020-07-30 | GSE150423 | GEO

Project description:High-throughput sequencing of environments

| PRJNA561896 | ENA

BCR repertoire analyis of class-switched and non-switched thymic B cells

Project description:We report that a large percentage of thymic B cells undergo class switching intrathymically. Thymic B cell class switching requires cognate T-B interaction. To determine whether B cell specificity was also important for thymic B cell class-switching, we sorted class-switched thymic B cells (CD19+B220+IgM-IgD-), unswitched B cells (CD19+B220+IgM+IgD+) and bulk splenic B cells in 3H9 heavy chain-fixed mice and performed high throughput sequencing analysis of the light chain of these populations. Results of this analysis indicated that class-switched thymic B cells have a distinct repertoire compared with unswitched thymic B cells and splenic B cells. Further reactivity tests indicated that a large part of BCRs enriched in class-switched thymic B cells are autoreactive. These data suggest that autoreactive B cells are selected into class-switched population and expanded in the thymus.

2016-08-10 | GSE85366 | GEO

Project description:wastewater treatment plants_ integron gene cassettes

| PRJNA421071 | ENA

BCR repertoire analyis of class-switched and non-switched thymic B cells

2016-08-10 | E-GEOD-85366 | biostudies-arrayexpress

RNA Helicase DDX1 Converts RNA G-Quadruplex Structures into R-Loops to Promote IgH Class Switch Recombination

Project description:We performed high-throughput sequencing of chromatin-associated RNA from CH12 cells depleted of Ddx1 and induced to undergo Class Switch Recombination (CSR).

2018-05-08 | GSE95635 | GEO

Pseudomonas aeruginosa

Project description:16s rRNA gene in Pseudomonas aeruginosa, class 1 integron

| PRJDB13537 | ENA

aquatic metagenome

Project description:Class 1 integron gene cassettes in rivers in Japan

| PRJDB12624 | ENA

HLA class II ligandome from HOM-2 and JY cell lines (HLA-DR an HLA-DP ligands)

Project description:A high-throughput mass spectrometry analysis was used to identify more than 16,000 cell peptides bound to several HLA-DR and -DP class II molecules isolated from large amounts of two human cell lines (HOM-2 and JY).

2021-11-03 | PXD028006 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data