Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome wide methylation profiling reveals methylation differences between reproductive and vegetative organ systems

ABSTRACT: Genome wide methylation profiling reveals methylation differences between reproductive and vegetative organ systems

PROVIDER: PRJEB17874 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR1735600_1.fastq.gz	Fastqsanger.gz
	ERR1735600_2.fastq.gz	Fastqsanger.gz
	ERR1735610_1.fastq.gz	Fastqsanger.gz
	ERR1735610_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 27

Similar Datasets

reproductive and vegetative leaves-Genopea 3.2

Project description:gnp10-01_genopea - reproductive and vegetative leaves - Transcriptome in leaves of Pea plants during the remobilization process . Effect of a nitrogen deficiency on this process.Note that lower leaves correspond to vegetative leaves (FV) and upper leaves correspond to leaves of the reproductive part (FR). - Analysis of expression in Pea vegetative and reproductive leaves in untreated and nitrogen deficient plants during remobilization process between beginning of flowering, pod filling and the end of pod filling.

2019-01-01 | GSE109789 | GEO

Vegetative and reproductive leaves - 12plex-medicago-2012-06_GENOPEA3.2

Project description:12plex_medicago-2012-06 - vegetative and reproductive leaves - Transcriptome in leaves of Medicago truncatula plants during the remobilization process . Effect of a nitrogen deficiency on this process.Note that lower leaves correspond to vegetative leaves (FV) and upper leaves correspond to leaves of the reproductive part (FR). - Analysis of expression in Medicago truncatula reproductive leaves in untreated and nitrogen deficient plants during remobilization process between beginning of flowering, pod filling and the end of pod filling.

2019-01-01 | GSE109521 | GEO

reproductive and vegetative leaves-Genopea 3.2

Project description:reproductive and vegetative leaves-Genopea 3.2

| PRJNA432045 | ENA

Distinct DNA methylomes of moso bamboo in the phase transition from vegetative to reproductive growth

Project description:In mammals, it is well known that DNA methylation has important roles during aging. However, age-related DNA methylation changes during phase transitions largely remain unclear in plants. Moso bamboo needs a very long time to transition from vegetative to floral phase. To comprehensively investigate the influence of DNA methylation on aging, we present here a distinctive single-base-resolution DNA methylation profile using both high-throughput bisulfite sequencing (BS-Seq) and single-molecule nanopore-based DNA sequencing, which covers the long period of vegetative growth and transition to flowering of moso bamboo’s development. We discovered that CHH methylation gradually accumulated from vegetative to reproductive growth in a time-dependent fashion. Importantly, DMR (differential DNA methylation) correlating with chronological aging occurred preferentially at both transcription start sites (TSS) and transcription termination sites (TTS). Genes with CG methylation changes showed enrichment of gene ontology (GO) categories in ‘vegetative to reproductive phase transition of meristem’. In addition, In combination with mRNA sequencing (RNA-Seq) revealed that DNA methylation in promoter, intron, and exon has different roles in regulating gene expression. Finally, circular RNA sequencing (circRNA-Seq) revealed that flanking introns of circRNAs show hypermethylation. Further analysis revealed that these flanking introns were enriched in LTR-retrotransponsons. Together, observations in this study provide insights about dynamic DNA methylation and circRNAs landscape with chronological ages, which paves the way to further study the impact of epigenetic factors on flowering in moso bamboo.

2021-04-30 | GSE139217 | GEO

Vegetative and reproductive leaves - 12plex-medicago-2012-06_GENOPEA3.2

Project description:Vegetative and reproductive leaves - 12plex-medicago-2012-06_GENOPEA3.2

| PRJNA431293 | ENA

Comparing transcriptomes of vegetative and reproductive plants of Selaginella nipponica

Project description:Six transcriptomes were generated for vegetative and reproductive plants of the lycophyte Selaginella nipponica, aiming at the molecular basis of the transition between the two growth phases, which is important to clarify the conservation of the SPL regulation in growth phase transition within land plants.

2021-01-01 | GSE164112 | GEO

Comparing transcriptomes of vegetative and reproductive plants of Selaginella nipponica

Project description:Comparing transcriptomes of vegetative and reproductive plants of Selaginella nipponica

| PRJNA688913 | ENA

Distinct transcriptome of moso bamboo in the phase transition from vegetative to reproductive growth

Project description:Bamboo represents the only major lineage of grasses that is native to forests and is one of the most important non-timber forest products in the world. Moso bamboo is a large woody bamboo that has ecological, economic and cultural value in Asia and accounts for ~70% of the total bamboo growth area (Peng et al., 2013). In the aspect of epigenetics of Moso bamboo,the total genomic DNA methylation rates in Moso bamboo at different chronological ages were significantly different (Yuan et al., 2014). Those show that the flowering of Moso bamboo are closely related to epigenetic modification. However, DNA methylation in single base resolution has never been reported in moso bamboo. In this study, leaves from three-week bamboo, one-year bamboo, flower in next year bamboo, flowering bamboo and Flower florets was used for bisulfite sequencing (BS-seq), and RNA-Seq. Genome-wide methylation profile and gene expression analysis were constructed to reveal the factors to regualte the phase transition from vegetative to reproductive growth in moso bamboo.

2021-04-30 | GSE121216 | GEO

Distinct DNA methylomes of moso bamboo in the phase transition from vegetative to reproductive growth

2021-04-30 | GSE122135 | GEO

Rel2-mediated transcriptional repression regulates vegetative and reproductive architecture in maize

Project description:Rel2-mediated transcriptional repression regulates vegetative and reproductive architecture in maize

| PRJNA475209 | ENA