Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Whole genome sequence for S. cerevisiae strains.

ABSTRACT: Whole genome sequence for S. cerevisiae strains.

PROVIDER: PRJEB1872 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR266438_1.fastq.gz	Fastqsanger.gz
	ERR266438_2.fastq.gz	Fastqsanger.gz
	ERR266439_1.fastq.gz	Fastqsanger.gz
	ERR266439_2.fastq.gz	Fastqsanger.gz
	ERR266440_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 25

Similar Datasets

Transcription profile analysis of S. cerevisiae strains

Project description:We report the application of single-molecule-based sequencing technology for transcription profile analysis of S. cerevisiae strains with different genetic background. By combining the whole genome sequence of these strains, we sought to explore the effects of genome mutations on the transcription diversities.

2011-09-10 | GSE31601 | GEO

Transcription profile analysis of S. cerevisiae ZTW1 wild-type and mutant strains

Project description:We report the application of single-molecule-based sequencing technology for transcription profile analysis of two S. cerevisiae strains. By combining the whole genome sequence of these strains,we sought to explore the effects of genomic structure variations on the transcription diversities.

2012-10-10 | GSE40905 | GEO

Transcription profile analysis of S. cerevisiae strains

2011-09-10 | E-GEOD-31601 | biostudies-arrayexpress

Whole genome sequence for S. cerevisiae isolates.

Project description:Whole genome sequence for S. cerevisiae isolates.

| PRJEB1871 | ENA

Transcription profile analysis of S. cerevisiae ZTW1 wild-type and mutant strains

2012-10-10 | E-GEOD-40905 | biostudies-arrayexpress

Genomic instability induced by furfural-treated in S. cerevisiae [whole genome]

Project description:Furfural is a key inhibitor in S. cerevisiae fermentation causing serious economic loss. To understand the toxic mechanisms of furfural-induced genomic instability and phenotypic evolution, we mapped chromosomal alterations in 21 furfural-treated yeast strains by whole genome SNP microarrays at a resolution about 1kb.

2017-10-13 | GSE104879 | GEO

QTOF HRMS data for Actinomycetes strains whole-genome-sequenced on Oxford Nanopore Flongle.

Project description:This is an HRMS dataset from Actinomycetes strains cultures that were also whole-genome-sequenced.

2021-08-06 | MSV000087950 | MassIVE

Whole genome sequence

Project description:Whole genome sequence Genome sequencing and assembly

| PRJNA339356 | ENA

Whole genome sequence

Project description:Whole genome sequence Genome sequencing and assembly

| PRJNA339355 | ENA

Analysis of the Saccharomyces cerevisiae Pan-Genome Reveals a Pool of Copy Number Variants Distributed in Diverse Yeast Strains From Differing Industrial Environments.

Project description:We created a multi-species microarray platform, containing probes to the whole genomes of seven different Saccharomyces species, with very dense coverage (one probe every ~500 bp) of the S. cerevisiae genome, including non-S288c regions, mitochondrial and 2 micron circle genomes, plus probes at fairly dense coverage (one probe every ~2,100 bp) for each of the genomes of six other Saccharomyces species: S. paradoxus, S. mikatae, S. kudriavzevii, S. bayanus, S. kluyveri and S. castellii. We performed array-Comparative Genomic Hybridization (aCGH) using this platform, examining 83 different Saccharomyces strains collected across a wide range of habitats; of these, 69 were widely used commercial S. cerevisiae wine strains, while the remaining 14 were from a wide range of other industrial and natural habitats. Thus, we were able to sample much of the pan-genome space of the Saccharomyces genus. We observed interspecific hybridization events, introgression events, and pervasive copy number variation (CNV) in all but a few of the strains. These CNVs were distributed throughout the strains such that they did not produce any clear phylogeny, suggesting extensive mating in both industrial and wild strains. To validate our results and to determine whether apparently similar introgressions and CNVs were identical by descent or recurrent, we also performed whole genome sequencing on nine of these strains. These data may help pinpoint genomic regions involved in adaptation to different industrial milieus, as well as shed light on the course of domestication of S. cerevisiae.

2012-02-01 | GSE26689 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data