Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Samsung Medical Centre: 85 panel samples

PROVIDER: PRJEB19523 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERZ391042.md5	Other
	P0034.vcf.gz	Vcf
	P0034.vcf.gz.tbi	Vcf
	ERZ391043.md5	Other
	P0033.vcf.gz	Vcf

Items per page:

1 - 5 of 255

Similar Datasets

Samsung Medical Centre: 85 panel samples

Project description:85 panel samples from the Samsung Medical Centre

2017-02-21 | PRJEB19523 | EVA

RNAseq Analysis of Formalin-Fixed Paraffin-Embedded Prostate Cancer Tissues

Project description:In an effort to identify biomarkers of recurrence, we have performed global RNA-sequencing on 106 formalin-fixed, paraffin-embedded (FFPE) prostatectomy samples from 100 patients at three independent sites, and identified a new set of biomarkers of biochemical recurrence composed of a 24-gene panel. We validated this 24-gene panel on an independent publicly available dataset of 140 patients and this new panel outperformed previously published markers based on cell proliferation gene sets in terms of prediction of biochemical recurrence (BCR). In addition we identified differences in gene expression between Gleason Pattern 4+3 and Gleason Pattern 3+4 tumors. 106 samples from 100 patients were sequenced. Six samples were sequenced from two independent RNA preps and libraries. All samples were taken from FFPE Radical Prostatectomies. Samples were obtained from Atlanta VA Medical Center, U. Toronto Sunnybrook Research Centre, and Moffitt Cancer Center.

2014-04-11 | E-GEOD-54460 | biostudies-arrayexpress

Project description:Samsung Medical Centre: 36 familal exomes

| PRJEB19524 | ENA

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

2013-11-18 | GSE50727 | GEO

Small RNA sequencing of hearts from female mice on high fat diet, from 85 strains

Project description:We used small RNA-Seq to characterize heart non-coding RNAs in 85 inbred strains of mice from the Hybrid Mouse Diversity Panel (HMDP), a reference resource population for cardiovascular and metabolic traits.

2023-01-01 | GSE207142 | GEO

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

Project description:Here we present genome-wide high-coverage genotyping data on a panel of 85 human samples from Eurasia that are used in addition to public data in studing the genomic context of a 24 kya old DNA sample from Southern Siberia that was sequenced to the avwerage depth of 1X. 85 samples were analysed with the Illumina platforms Human610-Quad v1.0, HumanHap650Yv3 (HumanHap650Yv3_A) and Human660W-Quad v1.0 Genotyping BeadChips and are described herein.

2013-11-18 | E-GEOD-50727 | biostudies-arrayexpress

Genetic Study of anti-EGFR Antibody Therapy Response in Colorectal Carcinoma

Project description:Metastatic colorectal carcinoma is one of the most common cancers in the world, second most commonly diagnosed cancer in Europe. Approximately 25% of patients initially diagnosed with colorectal carcinoma have metastases at the time of the first diagnosis and almost 50% of the diagnosed patients develop metastases, which explains the high mortality rate of these tumors. The carcinogenic process can be inhibited by the inactivation of EGFR receptors, making them important therapeutic targets. However, around 90-80% of patients do not respond to the EGFR targeted therapy. Resistance is mainly due to KRAS gene mutations. In this study, we built a 171 mutations panel (OncoAlvo®) that screens all mutations recommended by the ESMO, ASCO & NICE Medical Guidelines with 99% accuracy. The samples were simultaneously genotyped by other techniques to validate our panel and accuracy.

2018-10-26 | GSE121805 | GEO

Identification of novel blood protein biomarkers in infants with Acute Intracranial Hemorrhage

Project description:Abusive head trauma (AHT) is a leading cause of mortality and morbidity in infants. We explored novel AHT biomarkers via untargeted proteomics of peripheral postmortem blood (PMB) specimens collected during medico-legal autopsies of infants. The panel of PMB biomarkers was confirmed in antemortem serum samples as a potential signature capable of being applied to living patients to support AHT screening and improve their prognosis through early medical care.

2023-01-07 | PXD028801 | Pride

Gene Expression in early and advanced atherosclerotic plaque from human carotid

Project description:The objective of this study is to identify genes and pathways involved in the progression of atherosclerotic plaques from early to advanced stage in humans. Samples from atherosclerotic carotid artery segments, from early ((pathological) intimal thickening and intimal xanthoma) and from advanced (thin or thick fibrous cap atheroma) lesions, have been retrieved from the Maastricht Pathology Tissue Collection (MPTC). Tissue was obtained during autopsy (Dept of Pathology, Maastricht University Medical Centre). Collection, storage in the Maastricht Pathology Tissue Collection (MPTC) and use of tissue and patient data were performed in agreement with the "Code for Proper Secondary Use of Human Tissue"

2011-04-25 | E-GEOD-28829 | biostudies-arrayexpress

Samsung Medical Centre: 36 familal exomes

Project description:36 familial exomes from the Samsung Medical Centre

2017-02-21 | PRJEB19524 | EVA