Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The Ectocarpus subulatus microbiome

ABSTRACT: Cultivation and metabarcoding of bacteria associated with Ectocarpus subulatus cultures

PROVIDER: PRJEB22665 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	CABVLD01.dat.gz	Other
	CABVLD01.fasta.gz	Fasta.gz
	CABVLD01.master.dat	Other
	CABVLE01.dat.gz	Other
	CABVLE01.fasta.gz	Fasta.gz

Items per page:

1 - 5 of 54

Similar Datasets

Ectocarpus - bacterial cocultures

Project description:Metabarcoding of brown algal (Ectocarpus) bacterial cocultures.

| PRJEB34356 | ENA

Genome-wide analysis of chromatin states of Ectocarpus sporophytes and gametophytes, experiment 2

Project description:The aim of this study was to analyze genome-wide patterns of histone post-translational modifications (PTMs) and nucleosome distribution during the sporophyte and gametophyte generations of the life cycle of the brown alga Ectocarpus. Analysis of the results of this experiment along with those generated by a second experiment “Genome-wide analysis of chromatin states of Ectocarpus sporophytes and gametophytes, experiment 1” indicated that the histone PTMs H3K4me2, H3K4me3, H3K9ac, H3K14ac and H3K27ac are associated with the transcriptional start sites (TSSs) of actively expressed genes, H3K36me3 preferentially marks gene bodies and is associated with gene activation, H4K20me3 marks transposons and is associated with gene repression, probably through the silencing of transposons in introns. H3K79me2 occurs in zones corresponding to about a third of the genome. These zones often span several genes and genes within H3K79me2 zones exhibit lower levels of transcript abundance.

2020-11-05 | GSE146366 | GEO

Genome-wide analysis of chromatin states of Ectocarpus sporophytes and gametophytes, experiment 1

Project description:The aim of this study was to analyze genome-wide patterns of histone post-translational modifications (PTMs) and nucleosome distribution during the sporophyte and gametophyte generations of the life cycle of the brown alga Ectocarpus. Analysis of the results of this experiment along with those generated by a second experiment “Genome-wide analysis of chromatin states of Ectocarpus sporophytes and gametophytes, experiment 2” indicated that the histone PTMs H3K4me2, H3K4me3, H3K9ac, H3K14ac and H3K27ac are associated with the transcriptional start sites (TSSs) of actively expressed genes, H3K36me3 preferentially marks gene bodies and is associated with gene activation, H4K20me3 marks transposons and is associated with gene repression, probably through the silencing of transposons in introns. H3K79me2 occurs in zones corresponding to about a third of the genome. These zones often span several genes and genes within H3K79me2 zones exhibit lower levels of transcript abundance.

2020-11-05 | GSE146359 | GEO

Ectocarpus

Project description:Ectocarpus sp. overview

| PRJNA785046 | ENA

A high-resolution transcriptome map of Ectocarpus siliculosus

Project description:Brown algae (Phaeophyceae) are complex photosynthetic organisms with a very different evolutionary history to green plants, to which they are only distantly related. These seaweeds are the dominant species in rocky coastal ecosystems and they exhibit many interesting adaptations to these, often harsh, environments. The brown algae are also important because they are one of only a very small number of eukaryotic lineages that have evolved complex multicellularity. This work used whole genome tiling array approach to generate a comprehensive transcriptome map of the filamentous seaweed Ectocarpus siliculosus (Dillwyn) Lyngbye, a model organism for the brown algae. Keywords: high-resolution tiling array, brown algae, ectocarpus

2010-04-07 | GSE19912 | GEO

Ectocarpus fasciculatus

Project description:Ectocarpus fasciculatus genome sequencing

| PRJNA353615 | ENA

Ectocarpus siliculosus

Project description:Ectocarpus siliculosus genome sequencing

| PRJNA353612 | ENA

Susceptible interaction Ectocarpus/Eurychasma

Project description:The pathosystem between the model brown alga Ectocarpus siliculsosus and the oomycete pathogen Eurychasma dicksonii was investigated with the aim to identify proteins involved in host repsonse. Comparative 2D electrophoresis was used to identify protein spots differentially expressed between uninfected control and infected algal tissue.

2018-10-19 | PXD001458 | Pride

Ectocarpus siliculosus response to copper stress

Project description:Transcriptomic study for the response of Ectocarpus siliculosus to mild copper stress (250 µg L-1 CuCl2) after 4h and 8h of exposure

2014-03-10 | E-MTAB-1286 | biostudies-arrayexpress

Ectocarpus sp. Ec197-21

Project description:Ectocarpus mutagenesis tests

| PRJNA326209 | ENA