Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Halophile protists from Cis-Urals region (Russia)

ABSTRACT: Eukaryotic communities of brackish and saline water bodies of Cis-Urals region (Russia) studied with 18S metagenomic sequencing on the Illumina platform (Miseq)

PROVIDER: PRJEB24972 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Halophile protists from Orenburg region (Russia)

Project description:Eukaryotic communities of saline water bodies in Orenburg region (Russia) studied with 18S metagenomic sequencing on the Illumina platform (Miseq)

| PRJEB24128 | ENA

Epigenetics of Yakutia and Central Russia regions

Project description:Lobachevsky University DNAm dataset. Whole blood DNA Methylation (EPIC) profiles from healthy samples from two regions: central Russia (131 samples) and Yakutia (114 samples) obtained in the Laboratory of System Medicine for Healthy Aging, Lobachevsky State University of Nizhny Novgorod, Russia Dataset contains DNAm data from 245 healthy control samples from two regions: central Russia (131) and Yakutia (114). The following characteristics are available for all samples: sex, age, region. Healthy participants in the central Russia region were recruited in 2019–2022. Yakutian participants we recruited in 2022. All measurements were performed at the Laboratory of System Medicine for Healthy Aging, Lobachevsky State University of Nizhny Novgorod, Russia.

2023-12-14 | GSE234461 | GEO

GWAS of tuberculosis in Russia

Project description:Genome-wide association study of cases of tuberculosis from St Petersburg and Samara, in Russia, compared to healthy controls from the same two cities. Genotype data from Affy6 array.

| EGAS00001001090 | EGA

Single-site CpG Profiling for KMT2D and HNF4A genomic region in pancreatic cancer cells.

Project description:Differential CpG methylation profiling for KMT2D and HNF4A genomic region in pancreatic cancer cells was performed using Illumina MiSeq.

2018-08-20 | GSE85961 | GEO

Mycobacterium tuberculosis variant bovis strain:BCG-1 (Russia)

Project description:Mycobacterium bovis BCG-1 (Russia) comparative study

| PRJNA306822 | ENA

Mycobacterium tuberculosis variant bovis strain:BCG-1 (Russia)

Project description:Mycobacterium bovis BCG-1 (Russia) comparative study

| PRJNA386261 | ENA

Subarctic rivers and brackish plume

Project description:Subarctic rivers and brackish plume, 16S and 18S amplicons sequencing

| PRJNA744875 | ENA

Ninespine stickleback WGS from Finland and Russia

Project description:Whole genome sequencing of ninespine sticklebacks from Finland and Russia

| PRJEB33474 | ENA

Global gene expression analysis of green spotted puffer fish gills in response to environmental calcium changes

Project description:This study aims to understand the molecular adaptation mechanisms of fish gills to environmental Ca2+ changes. Using SuperSAGE, we compared the gene expression profiles of T. nigroviridis gills transferred from natural brackish water (10 ppt salinity,2.9 mM Ca2+) to artificial brackish water with control (2.9 mM), low (0.01 mM) or high (10 mM) Ca2+ concentrations for 2 or 12h.

2011-01-03 | GSE19854 | GEO

Arabidopsis HOT3/eIF5B1 constrains rRNA RNAi by facilitating 18S rRNA maturation during translation initiation (miRNA-Seq)

Project description:Ribosome biogenesis is essential for protein synthesis in gene expression. Yeast eIF5B has been shown biochemically to facilitate 18S rRNA 3’ end maturation during late-40S ribosomal subunit assembly and gate the transition from translation initiation to elongation. But the effects of eIF5B have not been studied at the genome-wide level in any organism, and 18S rRNA 3’ end maturation is poorly understood in plants. Arabidopsis HOT3/eIF5B1 was found to promote development and heat-stress acclimation by translational regulation, but its molecular function remained unknown. Here, we show that HOT3 is a late-stage ribosome biogenesis factor that facilitates 18S rRNA 3’ end processing and is a translation initiation factor that globally impacts the transition from initiation to elongation. By developing and implementing 18S-ENDseq, we revealed previously unknown events in 18S rRNA 3’ end maturation or metabolism. We quantitatively defined new processing hotspots and identified adenylation as the prevalent non-templated RNA modification at the 3’ ends of pre-18S rRNAs. Aberrant 18S rRNA maturation in hot3 further activated RNAi to generate RDR1- and DCL2/4-dependent risiRNAs mainly from a 3’ portion of 18S rRNA. We further showed that risiRNAs in hot3 were predominantly localized in ribosome-free fractions not responsible for the 18S rRNA maturation or translation initiation defects in hot3. Our study uncovered the molecular function of HOT3/eIF5B1 in 18S rRNA maturation at the late-40S assembly stage and revealed the regulatory crosstalk among ribosome biogenesis, mRNA translation initiation, and siRNA biogenesis in plants.

2023-04-19 | GSE223171 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data