Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Kakapo mitogenomes

ABSTRACT: Full mitogenomes in the critically endangered kākāpō reveal major post-glacial and anthropogenic effects on neutral genetic diversity

PROVIDER: PRJEB25924 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR2505730.fastq.gz	Fastqsanger.gz
	ERR2506006.fastq.gz	Fastqsanger.gz
	ERR2506007.fastq.gz	Fastqsanger.gz
	ERR2505729.fastq.gz	Fastqsanger.gz
	ERR2519050.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 286

Similar Datasets

First mitogenomes from Calabria

Project description:First Bronze Age human mitogenomes from Calabria (Grotta della Monaca, Southern Italy)

| PRJEB44125 | ENA

Pongo pygmaeus

Project description:Bornean orangutan; a critically endangered hominoid

| PRJNA28639 | ENA

Expression data from Xenopus laevis liver

Project description:Pregnane X receptor (PXR) is generally considered the most important sensor of natural and anthropogenic xenobiotics in vertebrates. In Xenopus, however, PXR plays a role in neural development and it is irresponsive to xenobiotics. We report a first broad-spectrum amphibian xenobiotic receptor, which is an ortholog of the mammalian constitutive androstane receptor (CAR). The low basal activity and pronounced responsiveness to activators such as drugs and steroids displayed by the Xenopus CAR resemble PXR, which both trace back to a common ancestor early in the divergence of land vertebrates. The constitutive activity of CAR emerged first in Sauropsida (reptiles and birds) and it is common to all fully terrestrial land vertebrates (Amniota). This activity can be mimicked by humanizing just two amino acids of the Xenopus CAR. These results demonstrate a remarkable plasticity of CAR which enabled its employment as Xenopus xenosensors. They open way to toxicogenomic and bioaugmentation studies in amphibians, a critically endangered taxon of land vertebrates. Taken together, we provide evidence for a much earlier origin of CAR, for its conservation in tetrapods which exceeds that of PXR, and for its remarkable functional plasticity which enabled its role as a PXR-like xenosensor in Amphibia.

2011-10-11 | GSE28510 | GEO

Rhododendron amesiae, Rhododendron concinnum

Project description:Does the critically endangered Rhododendron amesiae need top conservation priority?

| PRJNA831316 | ENA

Expression data from Xenopus laevis liver

2011-10-10 | E-GEOD-28510 | biostudies-arrayexpress

The effects of permethrin on the transcriptome of an endangered fish, the delta smelt (Hypomesus transpacificus)

Project description:Research on the effects of contaminants on fishes is often conducted on well-studied model test species, whose responses may be different than those of species of conservation concern. We used an oligonucleotide microarray to examine the effects of permethrin, a widely used pyrethroid pesticide, on a critically endangered fish species endemic to Northern California, the delta smelt (Hypomesus transpacificus). These results demonstrate the effects of a widely used pesticide on a sensitive fish species at concentrations below those that affect model test species. Twenty samples were run on twenty arrays, there were four replicates for each of four permethrin exposure concentrations and a control group.

2015-09-01 | E-GEOD-67521 | biostudies-arrayexpress

Aboriginal Heritage Project

Project description:Aboriginal mitogenomes reveal 50,000 years of regionalism in Australia

| PRJEB15344 | ENA

The effects of permethrin on the transcriptome of an endangered fish, the delta smelt (Hypomesus transpacificus)

2015-09-01 | GSE67521 | GEO

Sarcogyps calvus isolate:Nui

Project description:De novo genome assembly of the critically endangered Asian king vulture (Sarcogyps calvus)

| PRJNA827941 | ENA

Acipenser schrenckii

Project description:Sex-biased expression of small RNA by microarray in critically endangered Amur sturgeon

| PRJNA327298 | ENA