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Campylobacter surveillance Latvia, 2008-2016

ABSTRACT: Campylobacter spp. prevalence, characterization of antimicrobial resistance and whole-genome sequencing analysis of isolates from various sources, 2008 – 2016, Latvia

PROVIDER: PRJEB26725 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR2580516_1.fastq.gz	Fastqsanger.gz
	ERR2580516_2.fastq.gz	Fastqsanger.gz
	ERR2591880_1.fastq.gz	Fastqsanger.gz
	ERR2591880_2.fastq.gz	Fastqsanger.gz
	ERR2591890_1.fastq.gz	Fastqsanger.gz

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Campylobacter species prevalence, characterisation of antimicrobial resistance and analysis of whole-genome sequence of isolates from livestock and humans, Latvia, 2008 to 2016.

Project description:BackgroundCampylobacter is the main cause of bacterial gastroenteritis worldwide. The main transmission route is through consumption of food contaminated with Campylobacter species or contact with infected animals. In Latvia, the prevalence of campylobacteriosis is reported to be low (4.6 cases per 100,000 population in 2016).AimTo determine prevalence, species spectrum and antimicrobial resistance (AMR) of Campylobacter spp. in Latvia, using data from various livestock and human clinical samples.MethodsWe analysed data of Campylobacter microbiological monitoring and AMR (2008 and 2014-16) in Latvia. Data from broilers, poultry, pigs, calves and humans were used to determine prevalence of Campylobacter. Additionally, 45 different origin isolates (22 human) were sequenced on the Illumina MiSeq platform; for each isolate core genome multilocus sequence typing was used and relevant antimicrobial resistance mechanisms were identified.ResultsOverall, Campylobacter prevalence in was 83.3% in pigs, 50.2% in broilers, 16.1% in calves and 5.3% in humans; C. jejuni was the predominant species in all sources except pigs where C. coli was main species. High level of resistance in Campylobacter were observed against fluoroquinolones, tetracycline and streptomycin, in most of sequenced isolates genetic determinants of relevant AMR profiles were identified.ConclusionsIn Latvia, prevalence of Campylobacter in livestock is high, especially in pigs and broilers; prevalence in poultry and humans were lower than in other European countries. AMR analysis reveals increase of streptomycin and tetracycline resistant broiler origin C. jejuni strains. WGS demonstrates a high compliance between resistance phenotype and genotype for quinolones and tetracyclines.

| S-EPMC6685098 | biostudies-literature

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