Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-sequencing for functional prediction of RNAs

ABSTRACT: RNA-sequencing for functional prediction of RNAs

PROVIDER: PRJEB27981 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

RNA-sequencing for functional prediction of RNAs

Project description:Single-cell RNA-sequencing of mouse fibroblasts for the identification and functional characterization of non-coding RNAs. Non-coding RNAs were assigned putative functions based on single-cell expression patters, e.g. phase specific expression during the cell cycle. Additionally, allele-level resolution was used to characterize coordinated and mutually exclusive expressions of noncoding RNAs against nearby protein coding genes.

2018-12-19 | E-MTAB-6385 | biostudies-arrayexpress

Microarray analysis and functional prediction of differentially-expressed circular RNAs in acquired middle ear cholesteatoma

Project description:To investigate the differential expression profiling of circular RNAs (circRNAs) between acquired middle ear cholesteatoma and normal skin, and to identify potential circRNAs contributing to the etiopathogenesis of middle ear cholesteatoma, circRNA microarray analysis and functional prediction were performed.

2021-12-23 | GSE171006 | GEO

Differential expression profiles and functional prediction of circular RNAs in pediatric dilated cardiomyopathy

Project description:Differential expression profiles and functional prediction of circular RNAs in pediatric dilated cardiomyopathy

| PRJNA675078 | ENA

Potential and functional prediction of six Circular RNAs as diagnostic markers for colorectal cancer

Project description:Potential and functional prediction of six Circular RNAs as diagnostic markers for colorectal cancer

| PRJNA813303 | ENA

Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis

Project description:The functional structure of all biologically active molecules is dependent on intra- and inter-molecular interactions. This is especially evident for RNA molecules whose functionality, maturation, and regulation requires formation of correct secondary structure through encoded base-pairing interactions. Unfortunately, intra- and inter-molecular base-pairing information is lacking for most RNAs. Here, we use high-throughput sequencing to interrogate all base-paired RNA in Arabidopsis thaliana, and identify ~200 new small (sm)RNA-producing substrates of RNA-DEPENDENT RNA POLYMERASE 6. Our comprehensive analysis of paired RNAs reveals conserved functionality within introns and both 5’ and 3’ untranslated regions (UTRs) of mRNAs, as well as a novel population of functional RNAs, many of which are the precursors of smRNAs. Finally, we identify intra-molecular base-pairing interactions to produce a genome-wide collection of RNA secondary structure models. These findings highlight the importance of base-paired RNAs in eukaryotes, and present an approach that should be widely applicable for the analysis of this key structural feature of RNA. Double-stranded (dsRNA) specific RNA sequencing (dsRNA-seq) in the unopened flowerbuds of wild-type col-0 plants and rdr6 mutant plants, including 2 samples of col-0 dsRNA (1X- or 2X- Ribominus-treated samples) and 1 sample of rdr6 dsRNA. Corresponding two smRNA libraries (smRNA-seq) of both wild-type col-0 plants and rdr6 mutant plants of the same tissue are also presented.

2010-10-04 | E-GEOD-23439 | biostudies-arrayexpress

Microarray analysis and functional prediction of differentially-expressed circular RNAs in acquired middle ear cholesteatoma

Project description:Microarray analysis and functional prediction of differentially-expressed circular RNAs in acquired middle ear cholesteatoma

| PRJNA718088 | ENA

Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis

2010-10-04 | GSE23439 | GEO

RNA sequencing for KSHV circular RNAs

Project description:RNA sequencing for KSHV circular RNAs

| PRJNA498320 | ENA

Deep sequencing of small RNAs from different tissues in soybean

Project description:Analysis of flanking genomic sequences of unique small RNAs enabled identification of 419 miRNAs. Expression analysis revealed that miRNAs were differentially expressed in different tissues and development stages. Prediction of the miRNA target genes suggested that they are involved in important processes in soybean growth and development. Most conserved soybean miRNAs guide the cleavage of conserved genes. Our study significantly increased the number of known conserved and non-conserved miRNAs in soybean. Our description of soybean miRNAs can be used for functional characterization. one sample, We sequenced 2,570,250 small RNAs representing 1,157,365 unique sequences from different soybean tissues using sequence-by-synthesis high-throughput sequencing

2011-11-02 | E-GEOD-33378 | biostudies-arrayexpress

Prediction, microarray and Northern blot analyses identify new intergenic small RNAs in Aliivibrio salmonicida

Project description:This SuperSeries is composed of the following subset Series: GSE25545: Prediction, microarray and Northern blot analyses identify new intergenic small RNAs in Aliivibrio salmonicida (LB medium vs. iron-limited condition) GSE25546: Prediction, microarray and Northern blot analyses identify new intergenic small RNAs in Aliivibrio salmonicida (wild type vs. LitR mutant) Refer to individual Series

2010-12-01 | E-GEOD-25558 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data