Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

YCR5b FY-Sake-12 progeny RADseq

ABSTRACT: RADseq of progeny tetrads of strain FY-Sake-12

PROVIDER: PRJEB32634 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR3327510_1.fastq.gz	Fastqsanger.gz
	ERR3327510_2.fastq.gz	Fastqsanger.gz
	ERR3327520_1.fastq.gz	Fastqsanger.gz
	ERR3327520_2.fastq.gz	Fastqsanger.gz
	ERR3327530_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 912

Similar Datasets

YCR30 FY-Sake-1 progeny RADseq

Project description:RADseq of progeny tetrads of strain FY-Sake-1

| PRJEB32518 | ENA

YCR31 Tecc-FY-1 progeny RADseq

Project description:RADseq of progeny tetrads of strain Tecc-FY-1

| PRJEB32563 | ENA

YCR5C Tecc-Sake-1 progeny RADseq

Project description:RADseq of progeny tetrads of strain Tecc-Sake-1

| PRJEB32670 | ENA

YCR32 FY-Tecc-msh2-1 progeny RADseq set A

Project description:RADseq of progeny tetrads from strain FY-Tecc-msh2-1, set A

| PRJEB33068 | ENA

YCR32b FY-Tecc-msh2-1 progeny RADseq set B

Project description:Radseq of progeny tetrads from strain FY-Tecc-msh2-1, set B

| PRJEB33282 | ENA

Saccharomyces cerevisiae FY strain:FY

Project description:Saccharomyces cerevisiae FY strain:FY Genome sequencing

| PRJNA226089 | ENA

RADseq

Project description:RADseq

| PRJNA575770 | ENA

RADseq

Project description:RADseq

| PRJNA575772 | ENA

[Candida] sake

Project description:[Candida] sake overview

| PRJNA667531 | ENA

RADseq for tumour mutation burden estimation and mutation signature analysis.

Project description:The utility of RADseq in an experimental setting is also demonstrated, based on our chasacterisation of an APOBEC mutation signature in an APOBEC3A transfected mouse cell line. 0D5 cells, derived from SSM3 cells, were co-transfected with a mixture containing pcDNA3.1 vectors expressing either APOBEC3A or APOBEC3B (kindly donated by Vincent Caval), pcDNA3.1 construct expressing deaminase null APOBEC3A linked to a uracil deglycosylase construct and a plasmid encoding mutant GFP and WT mCherry that is a reporter for APOBEC mutagenesis. Cells were grown, and gDNA extracted, prior to preparation of RADseq libraries using a PstI- MspI double-digest. Libraries underwent a Pippin Prep to select fragments in the size range of 220-520 bp (genomic sequence plus 148 bp of adapters). Single-end sequencing (1x101bp) was performed on an Illumina NovaSeq6000 utilizing v1.5 chemistry. Reads were aligned to mm10 using bwa mem and variants called using the GATK4 pipeline.

2023-06-30 | GSE234146 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data