Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The soil mycobiota of Colombian agroenvironments

ABSTRACT: The soil mycobiota of Colombian agroenvironments

PROVIDER: PRJEB32659 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

A meta-barcoding analysis of soil mycobiota of the upper Andean Colombian agro-environment.

Project description:Colombia is a country for which one of the highest biodiversity rates is reported, and one of the first in the tropical areas where an effort was made to gather information on indigenous fungi. Nevertheless, mycological data are still scarce and discontinuous, above all on soil fungi. The present study wanted to contribute to unveil the large soil fungal biodiversity in the upper Andean Colombian agro-ecosystems. The studied area is located in the department of Boyacà, considered with a notable economical value, partly devoted to subsistence agriculture. More than 150 described species were revealed in this study, belonging to 5 phyla with Ascomycota representing the dominant taxon. Basidiomycota and Zygomycota are also well represented, dominated by species of the genus Sebacina and Mortierella respectively, mainly distributed in the semi-natural plots (woodland and grassland). Most of the species are reported as first records for Colombia. Some of them are particularly interesting for their conservation significance such as Geoglossum fallax, which is the dominant species in the unimproved grassland plot. The bootstrap-based clustering analysis showed a different distribution of the species in orchards and non-cultivated areas as a possible response of the fungal community to different use of soil in the agro-environment.

| S-EPMC6625999 | biostudies-literature

ASD gut mycobiota

Project description:ASD gut mycobiota

| PRJEB15420 | ENA

Human milk mycobiota

Project description:Human milk mycobiota Metagenome

| PRJNA536254 | ENA

Development and Validation of an in-house library with Colombian Candida auris strains in MALDI TOF MS to improve yeast identification

Project description:Creation of a new library entries for Candida auris using MALDI Biotyper. Candida auris has a high genetic variability in the world, the identification of Colombian isolates is difficult using the main Bruker library. A new in-house library was created using Colombian isolated and was validated using 300 isolated strains

2020-06-02 | PXD016387 | Pride

Microbial diversity of semi-arid soil in the Colombian Caribbean

Project description:Microbial diversity of semi-arid soil in the Colombian Caribbean Raw sequence reads

| PRJNA817243 | ENA

Mycobiota composition of Nebbiolo grape

Project description:Mycobiota composition of Nebbiolo grape

| PRJNA575160 | ENA

A comprehensive study to understand the effects of soil type, soil transplant and landuse changes on soil microbial community and its feedback responses

Project description:The experiment at three long-term agricultural experimental stations (namely the N, M and S sites) across northeast to southeast China was setup and operated by the Institute of Soil Science, Chinese Academy of Sciences. This experiment belongs to an integrated project (The Soil Reciprocal Transplant Experiment, SRTE) which serves as a platform for a number of studies evaluating climate and cropping effects on soil microbial diversity and its agro-ecosystem functioning. Soil transplant serves as a proxy to simulate climate change in realistic climate regimes. Here, we assessed the effects of soil type, soil transplant and landuse changes on soil microbial communities, which are key drivers in Earth’s biogeochemical cycles.

2016-02-04 | GSE77546 | GEO

Mycobiota of corn silage

Project description:Mycobiota of corn silage Raw sequence reads

| PRJNA814208 | ENA

soil mcirobial functional communities

Project description:To study the soil mcirobial functional communities and the nutrient cycles couplings changes after exposure to different contaminant

2020-12-31 | GSE135153 | GEO

Folsomia candida soil analysis expression assay

Project description:The present invention relates to methods for determining soil quality, and especially soil pollution, using the invertebrate soil organism Folsomia candida also designated as springtail. Specifically, the present invention relates to a method for determining soil quality comprising: contacting Folsomia Candida with a soil sample to be analysed during a time period of 1 to 5 days; isolating said soil contacted Folsomia Candida; extracting RNA from said isolated soil contacted Folsomia Candida; determing a gene expression profile based on said extracted RNA using microarray technology; comparing said gene expression profile with a reference gene expression profile; and determing soil quality based expression level differences between said gene expression profile and said control expression profile.

2014-07-19 | GSE59588 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data