Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Macrosiphum euphorbiae RNA-seq

ABSTRACT: Macrosiphum euphorbiae whole body Transcriptome

PROVIDER: PRJEB35133 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR4310200_1.fastq.gz	Fastqsanger.gz
	ERR4310200_2.fastq.gz	Fastqsanger.gz
	ERR4310193_1.fastq.gz	Fastqsanger.gz
	ERR4310193_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 31

Similar Datasets

Macrosiphum euphorbiae

Project description:Macrosiphum euphorbiae whole body Transcriptome

| PRJNA216124 | ENA

Macrosiphum euphorbiae

Project description:Macrosiphum euphorbiae overview

| PRJNA174057 | ENA

Macrosiphum euphorbiae strain:Tomato

Project description:Macrosiphum euphorbiae strain:Tomato Transcriptome or Gene expression

| PRJNA173897 | ENA

Macrosiphum rosae

Project description:Macrosiphum rosae overview

| PRJNA852314 | ENA

Hyles euphorbiae

Project description:Hyles euphorbiae overview

| PRJNA821569 | ENA

Sequence analysis of the potato aphid Macrosiphum euphorbiae transcriptome identified two new viruses.

Project description:The potato aphid, Macrosiphum euphorbiae, is an important agricultural pest that causes economic losses to potato and tomato production. To establish the transcriptome for this aphid, RNA-Seq libraries constructed from aphids maintained on tomato plants were used in Illumina sequencing generating 52.6 million 75-105 bp paired-end reads. The reads were assembled using Velvet/Oases software with SEED preprocessing resulting in 22,137 contigs with an N50 value of 2,003bp. After removal of contigs from tomato host origin, 20,254 contigs were annotated using BLASTx searches against the non-redundant protein database from the National Center for Biotechnology Information (NCBI) as well as IntereProScan. This identified matches for 74% of the potato aphid contigs. The highest ranking hits for over 12,700 contigs were against the related pea aphid, Acyrthosiphon pisum. Gene Ontology (GO) was used to classify the identified M. euphorbiae contigs into biological process, cellular component and molecular function. Among the contigs, sequences of microbial origin were identified. Sixty five contigs were from the aphid bacterial obligate endosymbiont Buchnera aphidicola origin and two contigs had amino acid similarities to viruses. The latter two were named Macrosiphum euphorbiae virus 2 (MeV-2) and Macrosiphum euphorbiae virus 3 (MeV-3). The highest sequence identity to MeV-2 had the Dysaphis plantaginea densovirus, while to MeV-3 is the Hubei sobemo-like virus 49. Characterization of MeV-2 and MeV-3 indicated that both are transmitted vertically from adult aphids to nymphs. MeV-2 peptides were detected in the aphid saliva and only MeV-2 and not MeV-3 nucleic acids were detected inside tomato leaves exposed to virus-infected aphids. However, MeV-2 nucleic acids did not persist in tomato leaf tissues, after clearing the plants from aphids, indicating that MeV-2 is likely an aphid virus.

| S-EPMC5875755 | biostudies-literature

Drought and heat waves associated with climate change affect performance of the potato aphid Macrosiphum euphorbiae.

Project description:The combined effect of drought and heat waves on insect-plant interactions is complex and not fully understood. Insects may indirectly benefit from water-deficit stress through increased plant nitrogen levels. Heat stress may have a direct negative effect, yet insect performance may be improved when day-time heat is followed by cooler night temperatures. We show that moderate water-deficit stress (25-30% pot capacity) and high day-night temperatures (30/20?°C) affected Macrosiphum euphorbiae on potato (Solanum tuberosum) differently than their interactions. Water stress lowered stomatal conductance, and both water and heat stress reduced leaf area. The effect of water stress on nymphal and adult survival depended on temperature. Water stress added to reduced nymphal survival at high but not current (25/15?°C) day-night temperatures. Adult survival at high temperatures was reduced only when combined with water stress. Water stress and high temperatures independently but not interactively reduced the number of daily offspring. Moderate water stress when combined with high temperatures had a negative bottom-up effect on aphid survival even though lower night temperatures aided in the recovery from direct heat stress. Our study illustrates the importance of combining multiple stressors to better understand their impact on insect-plant interactions in the context of climate change.

| S-EPMC6403351 | biostudies-literature

Macrosiphum rosae isolate:ROC1

Project description:Macrosiphum rosae isolate:ROC1 Genome sequencing and assembly

| PRJNA576965 | ENA

Hyles euphorbiae isolate:Heuphorbiae1

Project description:Hyles euphorbiae isolate:Heuphorbiae1 Genome sequencing and assembly

| PRJNA811357 | ENA

Hyles euphorbiae isolate:DD_SB_20211214

Project description:Hyles euphorbiae isolate:DD_SB_20211214 Genome sequencing and assembly

| PRJNA794104 | ENA