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Soil and Root's Microbiome and Resistome antibiotic exposure thougr irrigation water

ABSTRACT: In this study we assessed the effects of indirect exposure of antibiotics via irrigation water in microbiomes and resistomes composition of soil and Lactuca Sativa (Lettuce) in a controlled setting. We collected samples from soil and roots, and microbiome composition of all samples were analyzed by 16s rDNA amplicon sequencing

PROVIDER: PRJEB35614 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR3697030_1.fastq.gz	Fastqsanger.gz
	ERR3697030_2.fastq.gz	Fastqsanger.gz
	ERR3697040_1.fastq.gz	Fastqsanger.gz
	ERR3697040_2.fastq.gz	Fastqsanger.gz
	ERR3697050_1.fastq.gz	Fastqsanger.gz

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Soil and Lactuca sativa resistome under exposure of antibiotics thorugh irrigation water.

Project description:In this study we assessed the effects of indirect exposure of antibiotics via irrigation water in microbiomes and resistomes composition of soil and Lactuca Sativa (Lettuce) in a controlled setting. We collected samples from soil and roots, and microbiome composition of all samples went through shotgun-sequencing.

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Soil and Root's Microbiome and Resistome antibiotic exposure

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Interactive effects of depth and differential irrigation on soil microbiome composition and functioning_PNNLSoilsSFA_Naylor

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Project description:Transcriptional profiling of three mexican maize landraces under 10, and 17 days stress and recovery irrigation A dye balanced modified loop design was implemented. Two biological replicates (pooling five representative plants) representing each sampling point for each genotype were obtained for purified RNA from 120 randomly chosen seedlings. This experiment involved a total of forty-eight (24 sets) of microarray hybridizations, including direct and dye swap comparisons between treatments as well as across the three landraces. This design allowed us to determine differences in gene expression between the three different landraces under drought stress (10 and 17 days) and at recovery irrigation compared to irrigated controls.

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Grape berry developmental series comparing irrigation treatments in a vineyard in Wingara, Victoria, Australia (WIN-05)

Project description:Changes in gene expression during berry development during a grape growing season were analysed. The effect on gene expression of different viticultural practises during grape berry development was investigated in this study by comparing two irrigation methods (standard versus prolonged deficit irrigation). Grape berries were collected and pooled on a weekly basis to obtaining a developmental series comprising of 17 developmental stages from flowering until harvest across the grape growing season for both standard and prolonged deficit irrigated vines. Gene expression patterns during development and between pruning treatments were obtained. Keywords: Time course, developmental series and treatments

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Project description:The purpose of this study is to analyze maize shoots growth under negative pressure to stabilize soil water content，Maize plants were subjected to two irrigation treatments. The first treatment was soil moisture dry-wet cycles, which was obtained using drip irrigation (control, DW). The second treatment was negative pressure to stabilize soil water content treatment (SW), which was obtained using the negative pressure irrigation (NPI) system.

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Project description:It was verified the impact of irrigation treatments (wet, optimal, dry and very dry) and three potato cultivars on soil microbial community.

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Irrigation Water and Fecal 16S rRNA

Project description:Irrigation Water and Fecal 16S rRNA Raw sequence reads

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