Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

A high-quality reference genome for cabbage obtained with SMRT reveals novel genomic features and evolutionary characteristics

ABSTRACT: Reference genome for cabbage

PROVIDER: PRJEB36072 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	CACVAK01.dat.gz	Other
	CACVAK01.fasta.gz	Fasta.gz
	CACVAK01.master.dat	Other

Items per page:

1 - 4 of 4

Similar Datasets

A high-quality reference genome for cabbage obtained with SMRT reveals novel genomic features and evolutionary characteristics

Project description:Reference genome for cabbage obtained with SMRT

| PRJEB36070 | ENA

Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics.

Project description:Complete and accurate reference genomes and annotations provide fundamental resources for functional genomics and crop breeding. Here we report a de novo assembly and annotation of a pea cultivar ZW6 with contig N50 of 8.98 Mb, which features a 243-fold increase in contig length and evident improvements in the continuity and quality of sequence in complex repeat regions compared with the existing one. Genome diversity of 118 cultivated and wild pea demonstrated that Pisum abyssinicum is a separate species different from P. fulvum and P. sativum within Pisum. Quantitative trait locus analyses uncovered two known Mendel's genes related to stem length (Le/le) and seed shape (R/r) as well as some candidate genes for pod form studied by Mendel. A pan-genome of 116 pea accessions was constructed, and pan-genes preferred in P. abyssinicum and P. fulvum showed distinct functional enrichment, indicating the potential value of them as pea breeding resources in the future.

| S-EPMC9534762 | biostudies-literature

SuperSAGE data from skunk cabbage spadices

2011-12-22 | GSE29852 | GEO

Transcriptome Analysis Between Green Cabbage (Brassica oleracea var. capitata) and Savoy Cabbage (Brassica oleracea var. sabauda)

Project description:We found several candidate genes might be involved in the crinkled leaf phenotype of savoy cabbage.

2023-11-20 | GSE245915 | GEO

SuperSAGE data from skunk cabbage spadices

Project description:This study aims at investigating the gene expression profile of thermogenic skunk cabbage (Symplocarpus renifolius). Using Super-SAGE, we compared the gene expression profile of different developmental stages of skunk cabbage spadices. To obtain the SuperSAGE libraries, we followed the original SuperSAGE protocol described by Matsumura and colleagues (Matsumura et al., 2003) with some modification. Total RNA of spadices in different developmental stage (immature, female, bisexual, and male) were isolated using RNAiso reagent. The SuperSAGE library was directly sequenced with a large-scale pyrosequencing method.

2011-12-22 | E-GEOD-29852 | biostudies-arrayexpress

Loss of BraA09g066480.3C leads to a wax-less phenotype in flowering Chinese cabbage

Project description:PURPOSE:To clarify the mechanism of the wax deficiency, the wax-less flowering Chinese cabbage doubled-haploid (DH) line ‘CX001’ and Chinese cabbage DH line ‘FT’, obtained from isolated microspore culture, were used in the experiments. Transcriptome analysis indicated that BraA09g066480.3C was expressed in ‘FT’ but not in ‘CX001’.The work presented herein demonstrated that BraA09g066480.3C was the causal gene for wax-less flowering Chinese cabbage ‘CX001’

2022-12-29 | GSE221778 | GEO

Transcription profiling of chinese cabbage exposed to prolonged cold

Project description:Identification of Chinese cabbage genes up-regulated by prolonged cold by using cDNA microarray.

2006-10-25 | E-MEXP-190 | biostudies-arrayexpress

Expression analysis of chinese cabbage (B.rapa ssp. pekinensis) : cold stress conditions

Project description:Using 300K′-high density microarray covering the chinese cabbage whole genome, genome-wide expression analyses of cold stress conditions.

2016-10-31 | GSE75145 | GEO

Cabbage rhizosphere soil

Project description:Cabbage rhizosphere soil Raw sequence reads

| PRJNA625409 | ENA

Cabbage rhizosphere soil

Project description:Cabbage rhizosphere soil Raw sequence reads

| PRJNA625415 | ENA