Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Fungal community structure in disease suppressive soils

ABSTRACT: Fungal community structure in disease suppressive soils from the Mediterranean climatic region assessed by 28S LSU gene sequencing

PROVIDER: PRJEB4037 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Fungal community structure in disease suppressive soils assessed by 28S LSU gene sequencing.

Project description: Not available

| S-EPMC3974846 | biostudies-literature

Structural transitions during yeast large ribosomal subunit maturation analyzed by tethered nuclease structure probing

Project description:Yeast large ribosomal subunit (LSU) precursors are subject to substantial changes in protein composition during their maturation due to coordinated transient interactions with a large number of ribosome biogenesis factors and due to the assembly of ribosomal proteins. These compositional changes go along with stepwise processing of LSU rRNA precursors and with specific rRNA folding events, as revealed by recent cryo-electron microscopy analyses of late nuclear and cytoplasmic LSU precursors. Here we aimed to analyze changes in the spatial rRNA surrounding of selected ribosomal proteins during yeast LSU maturation. For this we combined a recently developed tethered tertiary structure probing approach with both targeted and high-throughput readout strategies. Several structural features of late LSU precursors were faithfully detected by this procedure. In addition, the obtained data let us suggest that early rRNA precursor processing events are accompanied by a global transition from a flexible to a spatially restricted rRNA conformation. For intermediate LSU precursors, a number of structural hallmarks could be addressed which include the fold of the internal transcribed spacer between 5.8S rRNA and 25S rRNA, the orientation of the central protuberance and the spatial organization of the interface between LSU rRNA domains I and III.

2017-04-01 | GSE97276 | GEO

Effect of land use and soil organic matter quality on the structure and function of microbial communities in pastoral soils: implications for disease suppression

Project description:Cropping soils vary in extent of natural suppression of soil-borne plant diseases. However, it is unknown whether similar variation occurs across pastoral agricultural systems. We examined soil microbial community properties known to be associated with disease suppression across 50 pastoral fields varying in management intensity. The composition and abundance of the disease-suppressive community were assessed from both taxonomic and functional perspectives.

2018-03-30 | GSE112489 | GEO

Bacterial Wilt Disease Suppressive and Conducive Soils

Project description:Bacterial Wilt Disease Suppressive and Conducive Soils Targeted loci environmental

| PRJNA507753 | ENA

Transcriptional correlates of FOXP3 expression in suppressive and non-suppressive primary human Treg cell clones.

Project description:Analysis of the transcriptional correlates of FOXP3 expression in suppressive and non-suppressive primary human Treg cell clones. Individual CD4+CD25High or Cd4+CD25- T cells were isolated from human PBMCs and expanded in vitro. After 3 weeks of expansion, individual clones were analysed for FOXP3 expression and in vitro suppressive activity against freshly sorted allogeneic effector T cells. This study analyses the total RNA isolated from FOXP3+ clones with suppressive potency to their non-suppressive counterparts. The resutls of this study should provide insights into the molecular pathways linking FOXP3 expression to distinct aspects of Treg phenotype and function. Total RNA obtained from individual clones of primary human regulatory and effector CD4+T cells.

2015-05-06 | E-GEOD-65650 | biostudies-arrayexpress

Fungi (LSU)

Project description:Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project.

| PRJNA51803 | ENA

Fungal metagenomics

Project description:Fungal 28S and ITS metagenomes from veterinary clinical cases

| PRJNA556991 | ENA

Transcriptional correlates of FOXP3 expression in suppressive and non-suppressive primary human Treg cell clones.

2015-05-06 | GSE65650 | GEO

Microbial Community Composition in Take-All Suppressive Soils.

Project description: Not available

| S-EPMC6156431 | biostudies-literature