Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

How tillage changes the distribution pattern of fungi in the soil

ABSTRACT: Effects on soil fungal patterns distribution of conservative agricultural practices in a Mediterranean area

PROVIDER: PRJEB41172 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

How Tillage and Crop Rotation Change the Distribution Pattern of Fungi.

Project description:Massive sequencing of fungal communities showed that climatic factors, followed by edaphic and spatial variables, are feasible predictors of fungal richness and community composition. This study, based on a long-term field experiment with tillage and no-tillage management since 1995 and with a crop rotation introduced in 2009, confirmed that tillage practices shape soil properties and impact soil fungal communities. Results highlighted higher biodiversity of saprotrophic fungi in soil sites with low disturbance and an inverse correlation between the biodiversity of ectomycorrhizal and saprotrophic fungi. We speculated how their mutual exclusion could be due to a substrate-mediated niche partitioning or by space segregation. Moreover, where the soil was ploughed, the species were evenly distributed. There was higher spatial variability in the absence of ploughing, with fungal taxa distributed according to a small-scale pattern, corresponding to micro-niches that probably remained undisturbed and heterogeneously distributed. Many differentially represented OTUs in all the conditions investigated were unidentified species or OTUs matching at high taxa level (i.e., phylum, class, order). Among the fungi with key roles in all the investigated conditions, there were several yeast species known to have pronounced endemism in soil and are also largely unidentified. In addition to yeasts, other fungal species emerged as either indicator of a kind of management or as strongly associated with a specific condition. Plant residues played a substantial role in defining the assortment of species.

| S-EPMC8247931 | biostudies-literature

Microbial communities from South African agricultural soils

Project description:Impact of conservative agricultural practices on soil microbial communities in South Africa

| PRJEB31903 | ENA

Winter wheat gene expression vs agricultural production systems

Project description:Comparative transcriptome profiling in winter wheat grown under different agricultural practices

2012-11-30 | E-MTAB-903 | biostudies-arrayexpress

Subsoil tillage (fungi)

Project description:Subsoil tillage (fungi) Raw sequence reads

| PRJNA781093 | ENA

Genome-wide distribution of H1t in mouse spermatogenic cells.

Project description:We report genome-wide distribution of Linker histone variant H1t in mouse spermatogenic cells. We found that H1t was mainly located at around transcriptional start site of genic area, positively correlated with the gene expression. This study using ChIP-seq analysis provides genomic distribution of H1t in mouse spermatogenic cells.

2023-03-09 | GSE146733 | GEO

Project description:Integrated agricultural practices

| PRJNA432129 | ENA

Genome-wide distribution of H2A-S40Gc in mouse trophoblast stem cells

Project description:We report genome-wide distribution of O-GlcNAcylated H2A at serine 40 (H2A-S40Gc) in mouse trophoblast stem cells (TSCs). We found that H2A-S40Gc was mainly located at genic area, positively correlated with the gene expression, and varied the localization during their differentiation. This study using ChIP-seq analysis provides genomic distribution of newly O-GlcNAc histone modification.

2016-09-13 | GSE74342 | GEO

Genome-wide distribution of H1foo and somatic H1s in mouse embryonic cells.

Project description:We report genome-wide distribution of linker histone variant H1foo and somatic H1s in mouse embryonic stem cells. We found that H1foo was mainly located at around transcriptional start site of genic area, positively correlated with the gene expression.

2021-06-28 | GSE171829 | GEO

Project description:Everglades Agricultural Area

| PRJNA606342 | ENA

soil metagenome

Project description:Soils from different agricultural practices

| PRJNA320800 | ENA