Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Rapid and real-time identification of fungi up to species level with long amplicon Nanopore sequencing

ABSTRACT: Samples collected from fungal cultures, skin of dogs and ZymoBIOMICSTM mock community (which includes Saccharomyces cerevisiae and Cryptococcus neoformans). The amplicons length of the fungal cultures and ZymoBIOMICSTM mock community is 3,5 Kb and 6 Kb, while the Malassezia spp samples used as control is 3,5 Kb. The amplicons length of the four samples from the skin is 3,5 Kb.

PROVIDER: PRJEB41658 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Project description:Fungal mock community

| PRJNA693350 | ENA

The human Gut Chip M-bM-^@M-^\HuGChipM-bM-^@M-^], an explorative phylogenetic microarray for determining gut microbiome diversity at Family level

Project description:A phylogenetic microarray targeting 66 families described in the human gut microbiota has been developped aud used to monitor the gut microbiota's structure and diversity. The microarray format provided by Agilent and used in this study is 8x15K. A study with a total of 4 chips was realized. Arrays 1 and 2: Hybridization with 100ng of labelled 16S rRNA gene amplicons from a mock community sample and 250ng of labelled 16S rRNA gene amplicons from 1 faecal sample. Each Agilent-030618 array probe (4441) was synthetized in three replicates. Arrays 3 and 4: Hybridization with 250ng of labelled 16S rRNA gene amplicons from 2 faecal samples. Each Agilent-40558 array probe (4441) was synthetized in three replicates.

2013-03-01 | E-GEOD-44752 | biostudies-arrayexpress

fungal mock community

Project description:fungal mock community under GO

| PRJNA623504 | ENA

Project description:Skin microbiome project/ mock community study

| PRJNA530770 | ENA

Oct4 and RNA Pol II target promoters in Ntera cells

Project description:These samples are biological replicates from Ntera cells that were crosslinked on different days. For each sample a matched total was produced in a parallel. Amplicons were made from each and hybridized on human 1.5 kb promoter arrays from Nimblegen. Keywords: ChIP-chip

2006-06-06 | GSE4904 | GEO

Project description:Amplicon sequencing of fungal mock community

| PRJNA565592 | ENA

fungal mock community

Project description:Fungal mock community (even and staggered)

| PRJNA482750 | ENA

Project description:Metatranscriptomics of a mock fungal community

| PRJNA521097 | ENA

Human skin

Project description:Fungal community of human skin

| PRJNA495913 | ENA

Project description:Illumina MiSeq sequencing of fungal mock community