Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

IlEryTage1

ABSTRACT: Erynnis tages (dingy skipper) genome assembly, ilEryTage1

PROVIDER: PRJEB41912 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	CAJHUV01.dat.gz	Other
	CAJHUV01.fasta.gz	Fasta.gz
	CAJHUV01.master.dat	Other

Items per page:

1 - 4 of 4

Similar Datasets

ilEryTage

Project description:Erynnis tages (dingy skipper)

| PRJEB42126 | ENA

ilEryTage1 alternate haplotype

Project description:Erynnis tages (dingy skipper) genome assembly, ilEryTage1, alternate haplotype

| PRJEB41913 | ENA

ilEryTage

Project description:Erynnis tages (dingy skipper), genomic and transcriptomic data

| PRJEB42092 | ENA

Erynnis tages

Project description:Erynnis tages overview

| PRJNA693944 | ENA

Skipper analysis of RNA-protein interactions highlights depletion of genetic variation in translation factor binding sites

Project description:Technology for crosslinking and immunoprecipitation followed by sequencing (CLIP-seq) has identified the transcriptomic targets of hundreds of RNA-binding proteins in cells. To improve the power of existing and future CLIP-seq datasets, we introduce Skipper, an end-to-end workflow that converts unprocessed reads into annotated binding sites using an improved statistical framework. Compared to existing methods, Skipper on average calls 3.1-4.2 times more transcriptomic binding sites and sometimes >10 times more sites, providing deeper insight into post-transcriptional gene regulation. Skipper also calls binding to annotated repetitive elements and identifies bound elements for 99% of enhanced CLIP experiments. We perform nine translation factor enhanced CLIPs and apply Skipper to learn determinants of translation factor occupancy including transcript region, sequence, and subcellular localization. Furthermore, we observe depletion of genetic variation in occupied sites and nominate transcripts subject to selective constraint because of translation factor occupancy. Skipper offers fast, easy, customizable analysis of CLIP-seq data.

2022-10-08 | GSE213867 | GEO

ilBlaAdus2

Project description:Blastobasis adustella (dingy dowd) genome assembly, ilBlaAdus2

| PRJEB44953 | ENA

Project description:skipper butterfly Genome sequencing and assembly

| PRJNA464401 | ENA

ilCarPala2

Project description:Carterocephalus palaemon (Arctic skipper) genome assembly, ilCarPala2

| PRJEB53508 | ENA

ilOchSylv3

Project description:Ochlodes sylvanus (large skipper) genome assembly, ilOchSylv3

| PRJEB44002 | ENA