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IlMelCinx1 alternate haplotype

ABSTRACT: Melitaea cinxia (Glanville fritillary) genome assembly, ilMelCinx1, alternate haplotype

PROVIDER: PRJEB42890 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
		Other
	CAJNAH01.dat.gz	Other
	CAJNAH01.fasta.gz	Fasta.gz
	CAJNAH01.master.dat	Other

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ilMelCinx

Project description:Melitaea cinxia (Glanville fritillary)

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Dispersal, flight metabolism and gene expression in the Glanville fritillary butterfly

Project description:We have measured flight effect in gene expression using individual-based RNA-seq data from two regional populations of the Glanville fritillary butterfly (Melitaea cinxia). Largest number of differentially expressed genes were between populations (3840 genes) and between males and females (1622 genes). 801 genes had significant flight effect. Enriched GO and KEGG categories among these genes included hypoxia, glycolysis, and TCA cycle.

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Project description:We have compared allelic and gene expression variation using individual-based RNA-seq data from four regional populations of the Glanville fritillary butterfly (Melitaea cinxia) in northern Europe. Two of the populations represent fragmented habitat and two continuous habitat. Based on sequence information, we constructed genealogy for four populations. Based on gene expression, we found 1841 genes to be differentially expressed between two different landscape types. Our results demonstrate genomic adaptations to living in fragmented landscapes, which are likely to be related to phenotypic life-history adaptations that have been documented for many species. RNA-seq from thorax, 174 individuals from four populations.

2014-07-04 | E-GEOD-47692 | biostudies-arrayexpress

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Project description:Melitaea cinxia (Glanville fritillary), genomic and transcriptomic data

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