Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

IyNysSpin

ABSTRACT: Nysson spinosus (large spurred digger wasp)

PROVIDER: PRJEB45176 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	CAJUXM01.dat.gz	Other
	CAJUXM01.fasta.gz	Fasta.gz
	CAJUXM01.master.dat	Other
	CAJUYC02.dat.gz	Other

Items per page:

1 - 5 of 20

Similar Datasets

iyNysSpin1

Project description:Nysson spinosus (large spurred digger wasp) genome assembly, iyNysSpin1

| PRJEB45459 | ENA

iyNysSpin

Project description:Nysson spinosus (large spurred digger wasp), genomic and transcriptomic data

| PRJEB45139 | ENA

iyNysSpin1 alternate haplotype

Project description:Nysson spinosus (large spurred digger wasp) genome assembly, iyNysSpin1, alternate haplotype

| PRJEB45458 | ENA

Nysson spinosus

Project description:Nysson spinosus overview

| PRJNA735836 | ENA

iyCerRyby

Project description:Cerceris rybyensis (ornate tailed digger wasp)

| PRJEB45199 | ENA

iyCerRyby1

Project description:Cerceris rybyensis (ornate tailed digger wasp) genome assembly, iyCerRyby1

| PRJEB45455 | ENA

Global gene occupancy by nuclear WASp during T cell development

Project description:To investigate a role of nuclear WASp in T cell development we performed WASp chromatin immunoprecipitation and deep sequencing (ChIP-Seq) in thymocytes and spleen CD4+ T cells. To pre-process raw ChIP-Seq data, the total number of reads were normalized and aligned against the mouse genome. WASp was enriched at transcription start sites of a large number of protein-coding genes. Many of the WASp-enriched genes were associated with RNA Polymerase II-enriched genes and active epigenetic marks of transcription; H3K4m3, H3K9a, H3K27a, and with the epigenetic mark for active enhancers H3K4m1. To study the distribution of overactive WASpI296T in the thymocyte genome and to identify regions enriched in WASpI296T binding, we performed second round of ChIP-Seq analysis using the WASp F-8 antibody. To detect differences in gene enrichment between thymocytes expressing wildtype WASp or WASpI296T, we applied stringent conditions and subtracted common genes between the two samples. Using this approach, we identify 70 WASpI296T-enriched genes. Functional clustering of these genes revealed that WASpI296T was associated with RNA Polymerase II genes in 11 functional groups of genes.thymocytes and spleen CD4+ T cells. WASp was enriched at transcription start sites of a large number of protein-coding genes.

2017-10-05 | GSE89172 | GEO

iyCerRyby

Project description:Cerceris rybyensis (ornate tailed digger wasp), genomic and transcriptomic data

| PRJEB45162 | ENA

iyCerRyby1 alternate haplotype

Project description:Cerceris rybyensis (ornate tailed digger wasp) genome assembly, iyCerRyby1, alternate haplotype

| PRJEB45454 | ENA

Next generation sequencing to determine DNA-binding sites of Wiskott-Aldich Syndrome Protein (WASP) in the cell line GM 11518 (wild-type) and in the cell line ID00003/WASP-c-EOS (WASP overexpressed)

Project description:To determine the global gene occupancy by Wiskott - Aldrich syndrome Protein (WASP) we perform ChIP-seq assay in two lymphoblastoid cell lines. We identify WASP-enriched genes, including several WASP-interaction genes previously reported; in addition, our results suggest the implication of WASP in diverse cellular process

2022-04-18 | GSE126483 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data