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JaNemVect

ABSTRACT: Nematostella vectensis

PROVIDER: PRJEB50792 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
		Other
	CAKOAW01.dat.gz	Other
	CAKOAW01.fasta.gz	Fasta.gz
	CAKOAW01.master.dat	Other
	CAKOBB01.dat.gz	Other

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1 - 5 of 12

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Geographical temperature stress in the sea anemone Nematostella vectensis

Project description:Gene expression of Nematostella vectensis from 5 different locations under chronic (30 day) temperature stress

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Impact of antibiotics, cell-free supernatant, LPS, and live cells on Nematostella vectensis gene expression

Project description:We used bacteria isolated from field samples of Nematostella vectensis to quantify gene expression through comparisons of transcriptomes.

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Evolutionary conservation of the eumetazoan gene regulatory landscape

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2013-12-02 | E-GEOD-46488 | biostudies-arrayexpress

ACME dissociation: a versatile cell fixation-dissociation method for single-cell transcriptomics

Project description:We performed single-cell transcriptome analysis (using 10x genomics 3' scRNA-seq v3.1 chemistry) in the sea anemone Nematostella vectensis (Cnidaria).

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Decoupling behavioral and transcriptional responses to color in an eyeless cnidarian

Project description:We utilized the eyeless sea anemone, Nematostella vectensis, to quantify gene expression differences between different colors of light (red, green, blue) and in constant darkness through comparisons of 96 transcriptomes

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Nematostella toxins expression under stress

Project description:Changes in Nematostella vectensis proteome expression were analyzed in 2 different Nematostella populations along the east coast of USA in different stress conditions vrs. normal growth temperature.

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MAPK signaling promotes embryonic neural induction and expression of embryonic patterning genes in Nematostella vectensis

Project description:While FGF mediated MEK/ERK signaling is required for apical tuft formation and metamorphosis in the sea anemone Nematostella vectensis (Rentzsch et al, 2008), nothing is known about the role of MEK/ERK signaling in inducing germ layers and cell types during early developmental stages. We therefore performed a genome wide expression array on UO126 (MEK inhibitor) treated blastula stages compared to DMSO treated control embryos and identified genes potentially involved in neurogenesis, germ layer specification and axial patterning.We performed transcriptional profiling of Nematostella vectensis blastula stages (24 hours post fertilisation @ 17C) using a custom made whole genome array (4x72K - A-MEXP-2380). DMSO treated wild-type embryos were compared to U0126 (MEK Inhibitor) treated embryos at the blastula stage.

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Project description:NvNcol3::mOrange2 is a stable transgenic line that labels cnidocytes(stinging cells) of the sea anemone Nematostella vectensis (Nakanishi et al., Development 2012). Two week old primary polyps were dissociated and the NvNcol3::mOrange2 positive and negative cells were enriched by FACS.

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