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STEC O26:H11 ST21 and O103:H2 ST17 outbreak in France, 2022

ABSTRACT: STEC O26:H11 ST21 and O103:H2 ST17 outbreak in France, 2022

PROVIDER: PRJEB51146 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR8778625_1.fastq.gz	Fastqsanger.gz
	ERR8778625_2.fastq.gz	Fastqsanger.gz
	ERR9514709_1.fastq.gz	Fastqsanger.gz
	ERR9514709_2.fastq.gz	Fastqsanger.gz

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Project description:Shiga toxin (Stx)-producing Escherichia coli (STEC) strains are a diverse group of food-borne pathogens with various levels of virulence for humans. In this study, we describe the use of a combination of multiple real-time PCR assays for the screening of 400 raw-milk cheeses for the five main pathogenic STEC serotypes (O26:H11, O103:H2, O111:H8, O145:H28, and O157:H7). The prevalences of samples positive for stx, intimin-encoding gene (eae), and at least one of the five O group genetic markers were 29.8%, 37.3%, and 55.3%, respectively. The H2, H7, H8, H11, and H28 fliC alleles were highly prevalent and could not be used as reliable targets for screening. Combinations of stx, eae variants, and O genetic markers, which are typical of the five targeted STEC serotypes, were detected by real-time PCR in 6.5% of the cheeses (26 samples) and included stx-wzx(O26)-eae-?1 (4.8%; 19 samples), stx-wzx(O103)-eae-? (1.3%; five samples), stx-ihp1(O145)-eae-?1 (0.8%; three samples), and stx-rfbE(O157)-eae-?1 (0.3%; one sample). Twenty-eight immunomagnetic separation (IMS) assays performed on samples positive for these combinations allowed the recovery of seven eae?1-positive STEC O26:H11 isolates, whereas no STEC O103:H2, O145:H28, or O157:H7 strains could be isolated. Three stx-negative and eae?1-positive E. coli O26:[H11] strains were also isolated from cheeses by IMS. Colony hybridization allowed us to recover STEC from stx-positive samples for 15 out of 45 assays performed, highlighting the difficulties encountered in STEC isolation from dairy products. The STEC O26:H11 isolates shared the same virulence genetic profile as enterohemorrhagic E. coli (EHEC) O26:H11, i.e., they carried the virulence-associated genes EHEC-hlyA, katP, and espP, as well as genomic O islands 71 and 122. Except for one strain, they all contained the stx1 variant only, which was reported to be less frequently associated with human cases than stx2. Pulsed-field gel electrophoresis (PFGE) analysis showed that they displayed high genetic diversity; none of them had patterns identical to those of human O26:H11 strains investigated here.

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STEC O26:H11 ST21 and O103:H2 ST17 outbreak in France, 2022

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