Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: RNAseq for European Seabass tissues

PROVIDER: PRJEB52776 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR9715540_1.fastq.gz	Fastqsanger.gz
	ERR9715540_2.fastq.gz	Fastqsanger.gz
	ERR9715550_1.fastq.gz	Fastqsanger.gz
	ERR9715550_2.fastq.gz	Fastqsanger.gz
	ERR9715560_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 168

Similar Datasets

Project description:ATACseq for European Seabass tissues

| PRJEB52775 | ENA

Project description:RNAseq for European Seabass leukocytes

| PRJEB52283 | ENA

Project description:RNAseq for European Seabass embryos

| PRJEB52160 | ENA

Project description:RNAseq for European Seabass head kidney

| PRJEB52285 | ENA

Project description:ATACseq for European Seabass embryos

| PRJEB52159 | ENA

Project description:ATACseq for European Seabass leukocytes

| PRJEB52282 | ENA

Project description:ATACseq for European Seabass head kidney

| PRJEB52284 | ENA

Seabass Meiotic Gynogenesis ddRAD

Project description:Gene-centromere mapping in meiotic gynogenetic European seabass

| PRJEB7015 | ENA

Microarray analysis of the Asian seabass (Lates calcarifer) brains

Project description:In this study, we attempt to characterize the transcriptomic profile of the Asian seabass brains collected from the male and female sexes. The objective is to identify genes that show sexually dimorphic expression in the brain of this species. For this experiment, Asian seabass were collected from the Marine Aquaculture Center of the Agri-Food & Veterinary Authority of Singapore. There were no treatments carried out in this experiment. Four brains from adult male seabass (5 years old) with M3-type testis and four brains from adult female seabass (5 years old) with F3-type ovaries were used in this experiment. (Gonads were examined by histology and classified according to sexual maturation status as described by Guiguen and colleagues (Guiguen et al. Environmental Biology of Fishes, 1994)).

2015-01-08 | GSE53901 | GEO

D labrax reference transcriptome

Project description:We aimed at obtaining a reference transcriptome for the European seabass. We characterized by Illumina paired-ends RNA-seq the D. labrax transcriptome for two targeted organs, using a diversity of conditions, animal stages and genotypes to warranty the widest variety of reconstructed transcripts. The brain (including pineal gland and pituitary) and liver were chosen as they are complementary and at a crossroads of many key neuroendocrine, metabolic and behavioral regulations. Dicentrarchus labrax_2 targeted organs (liver and brain) with two technical replicates each (using two different fragment sizes) half a GAIIX run total. We used two flow cells per organ and each was corresponding to a different fragment size. The expected sizes were 350 and 500bp.

2014-02-01 | E-MTAB-1867 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data