GS112 Indian Ocean
Ontology highlight
ABSTRACT:
REPOSITORIES: ENA
Dataset's files
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| ERR650528.fastq.gz | Fastqsanger.gz |
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Project description:The Regional Indian Ocean model based on Modular Ocean Model (MOM4p1) was used to understand the importance of a realistic representation of bathymetry on Ocean General Circulation. The model has 1/4° uniform horizontal resolution and is forced with Coordinated Ocean-Ice Reference Experiments (CORE-II) inter-annual forcing with two simulations named BLND (realistic bathymetry) and OM3 (smoothed bathymetry), which only differ in the representation of bathymetry for the years 1992-2005. We also used recent reanalysis products from ORAS5 and SODA3 and ADCP observation to compare the subsurface currents. We show that by the inclusion of realistic bathymetry, there is a significant improvement in the upper ocean salinity, temperature, and currents, particularly near the coast. The salinity and temperature of the upper ocean are very close to the observed value near the coast. The bias in the salinity and temperature was reduced to half in BLND simulation compared to OM3, which led to a more realistic East India Coastal Current (EICC). We show the first evidence of a basin-wide cyclonic gyre over the Bay of Bengal at 1000 m depth during spring, which is just opposite to that of a basin-wide anti-cyclonic gyre at the surface. We found the presence of poleward EICC during spring at 1000 m and 2000 m depth, which is opposite to that of the surface. The presence of this deeper EICC structure is completely absent during fall. We show the presence of a boundary current along the coast of Andaman and Nicobar Island at a depth of 2000 m. The observed Wyrtki Jet (WJ) magnitude and spatial structure are most realistically reproduced in BLND simulation as compared to OM3 simulations. Both ORAS5 and SODA reanalysis products underestimate the WJ magnitude. The presence of the Maldives Islands is responsible for the westward extent of Equatorial Under Current (EUC). The presence of Maldives also creates wakes on the leeward side in the EUC zonal current. During fall, EUC is better defined in the eastern Equatorial Indian Ocean and lies at a depth of between 50 and 100 m, unlike its spring counterpart, in which its core is located slightly deeper, between 100 and 150 m depth. During peak summer months, June-July, a strong eastward zonal jet is present at 1000 m depth, similar to Wyrtki Jet (WJ). Inter-monsoon Jets, i.e., spring and fall jets, are also seen but are in the opposite direction, i.e., westward, unlike eastward in WJ.
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Project description:To elucidate how does the gene expression profiles of whole transcriptome of P.fucata response to seawater acidification and warming, we have employed microarray as a tool to identify gene responses in these stress.The pearl oysters were added into the tanks with the maintaining conditions of temperature 25 °C and 31 °C, acidity pH7.8 and pH7.5, salinity 33‰ in recirculating seawater. The temperatures and pH values in the studies were near future levels and predicted for 2100 and 2300.
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Project description:The characterization of global marine microbial taxonomic and functional diversity is a primary goal of the Global Ocean Sampling Expedition. As part of this study, 19 water samples were collected aboard the Sorcerer II sailing vessel from the southern Indian Ocean in an effort to more thoroughly understand the lifestyle strategies of the microbial inhabitants of this ultra-oligotrophic region. No investigations of whole virioplankton assemblages have been conducted on waters collected from the Indian Ocean or across multiple size fractions thus far. Therefore, the goals of this study were to examine the effect of size fractionation on viral consortia structure and function and understand the diversity and functional potential of the Indian Ocean virome. Five samples were selected for comprehensive metagenomic exploration; and sequencing was performed on the microbes captured on 3.0-, 0.8- and 0.1 µm membrane filters as well as the viral fraction (<0.1 µm). Phylogenetic approaches were also used to identify predicted proteins of viral origin in the larger fractions of data from all Indian Ocean samples, which were included in subsequent metagenomic analyses. Taxonomic profiling of viral sequences suggested that size fractionation of marine microbial communities enriches for specific groups of viruses within the different size classes and functional characterization further substantiated this observation. Functional analyses also revealed a relative enrichment for metabolic proteins of viral origin that potentially reflect the physiological condition of host cells in the Indian Ocean including those involved in nitrogen metabolism and oxidative phosphorylation. A novel classification method, MGTAXA, was used to assess virus-host relationships in the Indian Ocean by predicting the taxonomy of putative host genera, with Prochlorococcus, Acanthochlois and members of the SAR86 cluster comprising the most abundant predictions. This is the first study to holistically explore virioplankton dynamics across multiple size classes and provides unprecedented insight into virus diversity, metabolic potential and virus-host interactions.
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