Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Oryza sativa Japonica Group

ABSTRACT: Transcriptome analysis of rice roots and tips in early development by massive parallel sequencing

OTHER RELATED OMICS DATASETS IN: E-GEOD-30367

PROVIDER: PRJNA143417 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR306316.fastq.gz	Fastqsanger.gz
	SRR306317.fastq.gz	Fastqsanger.gz
	SRR306318.fastq.gz	Fastqsanger.gz
	SRR306319.fastq.gz	Fastqsanger.gz
	SRR306320.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Oryza sativa Japonica Group transcriptome sequencing

Project description:Phosphate starvation/sufficient rice seedling, root or shoot Pi-starvation or Pi-sufficient stresses responsible rice genes, including previously unannotated genes were identified by Illumina mRNA-seq technology. 53 million reads from Pi-starvation or Pi-sufficient root or shoot tissues were uniquely mapped to the rice genome, and these included 40574 RAP3 transcripts in root and 39748 RAP3 transcripts in shoot. We compared our mRNA-seq expression data with that from Rice 44K oligomicroarray, and about 95.5% (root) and 95.4% (shoot) transcripts supported by the array were confirmed expression both by the array and by mRNA-seq, Moreover, 11888 (root) and 11098 (shoot) RAP genes which were not supported by array, were evidenced expression with mRNA-seq. Furthermore, we discovered 8590 (root) and 8193 (shoot) previously unannotated transcripts upon Pi-starvation and/or Pi-sufficient.

2012-01-06 | E-MTAB-4302 | biostudies-arrayexpress

Oryza sativa Japonica Group

Project description:Transcriptome study of rice early response to rice blast fungus

| PRJNA178235 | ENA

Oryza sativa Japonica Group

Project description:Expression data from rice roots treated with Glu

| PRJNA324537 | ENA

Oryza sativa Japonica Group

Project description:Transcriptome profiling of Pythium graminicola-inoculated rice roots.

| PRJNA147077 | ENA

Oryza sativa Japonica Group

Project description:RNA-seq analysis of quercetin-treated rice roots