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Penicillium decumbens

ABSTRACT: Transcriptomic analysis of cellulolytic fungus Penicillium decumbens strains in response to different carbon sources

PROVIDER: PRJNA149945 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR388269.fastq.gz	Fastqsanger.gz
	SRR388270.fastq.gz	Fastqsanger.gz
	SRR388271.fastq.gz	Fastqsanger.gz
	SRR388272.fastq.gz	Fastqsanger.gz
	SRR388273.fastq.gz	Fastqsanger.gz

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Transcriptomic analysis of fungus Penicillium decumbens and brlA deletion strains in different culture medium

Project description:Transcriptomic analysis of fungus Penicillium decumbens and brlA deletion strains in liquid medium and solid medium respectivelly Examination of differential gene expressions by Penicillium decumbens strains 114-2 and brlA deletion stains in liquid medium and solid medium

2013-04-09 | E-GEOD-45855 | biostudies-arrayexpress

Transcriptomic analysis of fungus Penicillium decumbens and brlA deletion strains in different culture medium

Project description:Transcriptomic analysis of fungus Penicillium decumbens and brlA deletion strains in liquid medium and solid medium respectivelly

2013-04-09 | GSE45855 | GEO

Penicillium decumbens

Project description:Transcriptomic analysis of fungus Penicillium decumbens and brlA deletion strains in different culture medium

| PRJNA196504 | ENA

Transcriptomic analysis of cellulolytic fungus Penicillium decumbens strains in response to different carbon sources

Project description:Digital gene expression profiling (DGE) was used to compare the responses of Penicillium decumbens strains to different carbon sources including glucose, cellulose and cellulose-wheat bran. In both wild-type strain 114-2 and cellulase hyperproducing mutant JU-A10-T, transcription of lignocellulolytic enzymes were significantly up-regulated in the presense of cellulose. Relative to 114-2, coordinated up-regulation of lignocellulolytic enzymes and down-regulation of amylases and proteases were observed in JU-A10-T, especially in the cellulose-wheat bran medium. The expression of the principal β-glucosidase BGLI gene was not elevated in JU-A10-T, like the cellulases and hemicellulases, suggesting a different regulatory mechanism for this enzyme. Functional analysis of genes up-regulated in JU-A10-T relative to 114-2 also showed enrichment of proteins involved in amino acid synthesis, protein synthesis, and post-translational modification, compatible with the higher level of production of secreted proteins in JU-A10-T.

2013-01-18 | GSE34288 | GEO

Penicillium oxalicum

Project description:Transcriptomic analysis of cellulolytic fungus Penicillium oxalicum and transcription factor mutant strains in response to different carbon sources

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Project description:A fast growing, cellulolytic fungus

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Transcriptomic analysis of cellulolytic fungus Penicillium oxalicum and transcription factor mutant strains in response to different carbon sources

Project description:RNA-seq was used to compare the responses of Penicillium oxalicum strains to different carbon sources including carbon-starvation, glucose and cellulose. The wild-type strain and transcription facor (ClrB, CreA and AmyR) mutants were studied.

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Expression profiling analysis of fungus Penicillium oxalicum wild type strain and its Podot1 deletion strain.

Project description:The goals of this study are to compare different gene expressions for Penicillium oxalicum wild type strain (WT), and Podot1 knockout strain (ΔPodot1) in different carbon sources. The deletion of Podot1 downregulated genes involved in the septin complex, extracellular region, and interspecies interaction between organisms when strains were cultivated with 2% glucose as carbon sources, and downregulated genes involved in cellulase activity, cellulose binding, glucosidase activity, and polysaccharide catabolic process when strains were cultivated with 1% microcrystalline cellulose and 1% wheat bran as carbon sources. We find the extracellular region was downregulated under both different carbon sources in ΔPodot1. This study provides the information that PoDot1 function are required in mycelial development and hydrolase activity of P. oxalicum.

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The effects of transcriptional activator engineering on the transcriptome of Penicillium oxalicum

Project description:The filamentous fungus Penicillium oxalicum can secret various enzymes for efficient saccharification of plant biomass materials. Expression of the constitutively active forms of transcriptional activators ClrB, XlnR and AraR could trigger the production of different sets of lignocellulolytic enzymes. Here, the transcriptomes of the three engineered strains were compared with that of wild type in the medium without carbon source.

2020-12-05 | GSE162657 | GEO

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