Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Poecilia latipinna

ABSTRACT: The sequence of Poecilia latipinna (Sailfin molly)

PROVIDER: PRJNA196862 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	LMXD01.dat.gz	Other
	LMXD01.fasta.gz	Fasta.gz
	LMXD01.master.dat	Other
	SRR5297354_1.fastq.gz	Fastqsanger.gz
	SRR5297354_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 20

Similar Datasets

Poecilia latipinna

Project description:Poecilia latipinna Raw sequence reads

| PRJNA280774 | ENA

Poecilia latipinna

Project description:Poecilia latipinna overview

| PRJNA196951 | ENA

Poecilia latipinna

Project description:Poecilia latipinna Genome sequencing and assembly

| PRJNA345437 | ENA

Poecilia latipinna strain:Bald Point, FL

Project description:Poecilia latipinna whole brain raw sequence reads

| PRJNA311756 | ENA

Poecilia latipinna strain:wild

Project description:Poecilia latipinna strain:wild Transcriptome or Gene expression

| PRJNA237193 | ENA

Poecilia mexicana

Project description:The sequence of Poecilia mexicana (Altantic molly)

| PRJNA196869 | ENA

Poecilia cf. sphenops 'black molly'

Project description:Poecilia cf. sphenops 'black molly' overview

| PRJNA206527 | ENA

Project description:The White Sailfin Molly (Poecilia Latipinna) Genotyping-by-sequencing

| PRJNA543508 | ENA

Poecilia cf. sphenops 'black molly'

Project description:Poecilia cf. sphenops 'black molly' Genome sequencing

| PRJNA203390 | ENA

Transcriptome profiling of Amazon molly and F1 interspecies hybrid

Project description:The Amazon molly is a unique clonal fish species that originated from an interspecies hybrid between Poecilia species P. mexicana and P. latipinna. It reproduces by gynogenesis, which eliminates paternal genomic contribution to offspring. Earlier study showed that Amazon molly exhibits bi-allelic expression for a large portion of the genome, leading to two main questions: 1. Are the allelic expression patterns from the initial hybridization event stabilized or changed during establishment of the asexual species and its further evolution? 2. Is allelic expression biased toward one parental allele a stochastic or adaptive process? To answer these questions, the allelic expression of P. formosa siblings was assessed to investigate intra- and inter-cohort allelic expression variability. For comparison, interspecies hybrids between P. mexicana and P. latipinna were produced in the laboratory to represent the P. formosa ancestor. We have identified inter-cohort and intra-cohort variation in parental allelic expression. The existence of inter-cohort divergence suggests functional P. formosa allelic expression patterns do not simply reflect the atavistic situation of the first interspecies hybrid but potentially result from long-term selection of transcriptional fitness. In addition, clonal fish exhibit a transcriptional trend representing minimal intra-clonal variability in allelic expression patterns compared to the corresponding hybrids. The intra-clonal similarity in gene expression translates to sophisticated genetic functional regulation at the individuum level. These findings suggest the parental alleles inherited by P. formosa form tightly regulated genetic networks that lead to a stable transcriptomic landscape within clonal individuals.

2021-01-05 | GSE164222 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data