Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Thermomyces lanuginosus strain:ATCC200065

ABSTRACT: Thermomyces lanuginosus strain:ATCC200065 Transcriptome or Gene expression

PROVIDER: PRJNA213840 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR946591.fastq.gz	Fastqsanger.gz

Items per page:

1 - 1 of 1

Similar Datasets

Transcriptome Analysis of Avicel Utilization by Thermomyces lanuginosus

Project description:Thermomyces lanuginosus is a thermophilic fungus whose genome encodes many carbohydrate-active enzymes involved in Avicel degradation. This study examined and compared the transcriptomes of T. lanuginosus during cultivation on Avicesl or glucose. We identified approximately 4485 genes that showed expression differences when T. lanuginosus was cultured on Avicel compared to glucose. Functional annotation of up-regulated genes showed enrichment for proteins predicted to be involved in Avicel degradation, but also many genes encoding proteins of unknown function. Our study represents the first analysis of transcriptomes, with biologic replicates, generated by RNA-seq technology. We conclude that RNA-seq based transcriptome characterization would expedite genetic network analyses and permit the dissection of complex biologic functions. mRNA profiles of 2-day old Thermomyces lanuginosus were generated by deep sequencing,in duplicate, using Illumina GAIIx.

2015-06-17 | E-GEOD-69763 | biostudies-arrayexpress

Transcriptome Analysis of Avicel Utilization by Thermomyces lanuginosus

2015-06-17 | GSE69763 | GEO

Thermomyces lanuginosus

Project description:Transcriptome Analysis of Avicel Utilization by Thermomyces lanuginosus

| PRJNA286684 | ENA

Thermomyces lanuginosus strain:0065

Project description:Thermomyces lanuginosus strain:0065 Raw sequence reads

| PRJNA842093 | ENA

Thermomyces lanuginosus SSBP

Project description:Thermomyces lanuginosus SSBP Genome sequencing and assembly

| PRJNA88097 | ENA

Proteomics of Thermomyces lanuginosus and Thermobifida fusca

Project description:A lable-free quantitative proteomics method was employed to study the difference of Thermomyces lanuginosus and Thermobifoda fusca when they grown different carbon sources

2020-03-04 | PXD017874 |

T. lanuginosus SSBP genome

Project description:Genome sequencing of Thermomyces lanuginosus SSBP

| PRJEB620 | ENA

Purification and preliminary characterization of a xylanase from Thermomyces lanuginosus strain SS-8.

Project description:Thermomyces lanuginosus SS-8 was isolated from soil samples that had been collected from near self-heating plant material and its extracellular cellulase-free xylanase purified approximately 160-fold using ion exchange chromatography and continuous elution electrophoresis. This xylanase was thermoactive (optimum temperature 60 °C) at pH 6.0 and had a molecular weight of 23.79 kDa as indicated by SDS-PAGE electrophoresis. The xylanase rapidly hydrolyzed xylan directly to xylose without the production of intermediary xylo-oligosaccharides within 15 min of incubation under optimum conditions. This trait of rapidly degrading xylan to xylose as a sole end-product could have biotechnological potential in degradation of agro-wastes for bioethanol manufacturing industry.

| S-EPMC3339585 | biostudies-literature

Thermomyces lanuginosus

Project description:Non-cellulolytic thermophilic fungus

| PRJNA88653 | ENA

Magnetic responsive Thermomyces lanuginosus lipase for biodiesel synthesis.

Project description:The low cost lipase derived from Thermomyces lanugionous was chosen to conjugate with Fe3O4 nanoparitcles as a magnetic responsive lipase (MRL) biocatalyst. The structure of MRL was observed by atomic force microscopy (AFM). The Fourier transform infrared (FTIR) spectroscopy analysis confirmed the lipase conjugated to Fe3O4 nanoparticles. Optimized conditions for the process of biodiesel production by MRL were investigated by the response surface methodology (RSM) and the Box-Behnken design (BBD). The optimized conditions for biodiesel production by MRL were as follows. The molar ratio of methanol to oil was 4.0, water content was 1.5 % as oil weight, the dosage of MRL to oil was 9.0 % (W/W) under 41?°C for 28?h. Under the optimized conditions, the yield of FAMEs by MRL reached 82.20 %. Further experiments showed that the MRL could be used 10 cycles and the yield of FAMEs decreased slightly by 10.97 %. These results indicated that Fe3O4 nanoparticle carrier could efficiently improve the FAMEs synthesis and enhance the MRL stabilization and reusability in the biodiesel production.

| S-EPMC7245248 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data