Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sediminibacterium salmoneum NBRC 103935

ABSTRACT: Sediminibacterium salmoneum NBRC 103935 Genome sequencing and assembly

PROVIDER: PRJNA219126 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	AXZP01.dat.gz	Other
	AXZP01.fasta.gz	Fasta.gz
	AXZP01.master.dat	Other
	AXZP01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Sediminibacterium sp. C3

Project description:Sediminibacterium sp. C3 Genome sequencing and assembly

| PRJNA182943 | ENA

Expression analysis of Gluconacetobacter xylinus NBRC 3288 delta-fnrG mutant

Project description:Investigation of whole genome gene expression level changes in a Gluconacetobacter xylinus NBRC 3288 delta-fnrG mutant, compared to the wild-type strain.

2021-07-16 | GSE41775 | GEO

Sediminibacterium roseum strain:SYL130

Project description:Sediminibacterium roseum strain:SYL130 Genome sequencing and assembly

| PRJNA601666 | ENA

Sediminibacterium sp. RHBRASLY1

Project description:Sediminibacterium sp. Filamentous Cyanobacterium LYN-HS Genome sequencing

| PRJNA780944 | ENA

Sediminibacterium soli strain:WSJ-3

Project description:Sediminibacterium soli strain:WSJ-3 Genome sequencing and assembly

| PRJNA601663 | ENA

Sediminibacterium goheungense strain:DSM 28323

Project description:Sediminibacterium goheungense DSM 28323 genome sequencing

| PRJNA331386 | ENA

Sediminibacterium ginsengisoli strain:dsm 22335

Project description:Sediminibacterium ginsengisoli DSM 22335 genome sequencing

| PRJNA303885 | ENA

Transcriptome analysis of Bacillus subtilis NBRC 16449 grown on surface of boiled soybeans under the similar condition to production of Japanese traditional soybean-fermented food "natto"

Project description:Purpose:The goals of this study are to clarify the B. subtilis NBRC 16449 response to soybeans. Methods: B. subtilis NBRC 16449 cells were aerobically cultured in liquid LB, LB solidified with agar, or on surface of boiled soybeans to logarithmic growth phase. Total RNAs were extracted from bacterial cells by Hot-Phenol method. Samples for RNA-seq were prepared according to Illmina protocol available from the manufacture. The sequence reads that passed quality filters were analyzed at the transcript isoform level with bowtie v0.11.2. Results: Using an optimized data analysis workflow, we mapped around 15 million sequence reads per sample to the whole genome of B. subtilis BEST195 and identified 4271 transcripts in B. subtilis NBRC 16449 with Bowtie aligner. Read count per genome was extracted from known gene annotations with HTSeq program. Compared the transcriptomes of B. subtilis NBRC 16449 grown on LB solidified with agar to that grown on surface of boiled soybeans, about 5% of genes showed the different expression levels.

2020-11-02 | GSE109523 | GEO

Sphingobium herbicidovorans NBRC 16415

Project description:Sphingobium herbicidovorans NBRC 16415 Genome sequencing and assembly

| PRJNA239216 | ENA

Gordonia sputi NBRC 100414

Project description:Gordonia sputi NBRC 100414 Genome sequencing and assembly

| PRJDA73363 | ENA