Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gynandropsis gynandra

ABSTRACT: Cleome gynandra Transcriptome

PROVIDER: PRJNA237449 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1162270.fastq.gz	Fastqsanger.gz
	SRR1162280.fastq.gz	Fastqsanger.gz
	SRR1162290.fastq.gz	Fastqsanger.gz
	SRR1162300.fastq.gz	Fastqsanger.gz
	SRR1162310.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 54

Similar Datasets

Gynandropsis gynandra

Project description:Cleome gynandra overview

| PRJNA158213 | ENA

Gynandropsis gynandra

Project description:Cleome gynandra leaf gradient

| PRJNA243610 | ENA

Gynandropsis gynandra

Project description:[E-MTAB-444] Transcription profiling by high throughput sequencing of Cleome gynandra developing and mature leaves

| PRJNA144505 | ENA

[E-MTAB-444] Transcription profiling by high throughput sequencing of Cleome gynandra developing and mature leaves

Project description:Cleome gynandra leaf development RNA-seq RNA-seq have been performed on developing (2mm length) and mature (10mm length) leaves of the C4 photosynthesis plant Cleome gynandra. 6 runs of Illumina 36-42 bp single end have been performed ArrayExpress Release Date: 2010-12-01 Publication Author List: Sylvain Aubry, Mali Salmon, Kim M Rutherford, Paul Bertone, Andrea Brautigam, Andreas PM Weber, Krystyna A Kelly, Julian M Hibberd Publication Title: De novo transcriptome assembly enables quantitative expression analysis in non-sequenced model organisms Person Roles: submitter Person Last Name: Aubry Person First Name: Sylvain Person Mid Initials: Person Email: sa530@cam.ac.uk Person Phone: +441223 330 220 Person Address: Department of Plant Sciences. University of Cambridge. Downing Street. CB2 3EA Cambridge Person Affiliation: University of Cambridge

2011-07-14 | GSE30605 | GEO

Cleome gynandra leaf development RNA-seq

Project description:RNA-seq have been performed on developing (2mm length) and mature (10mm length) leaves of the C4 photosynthesis plant Cleome gynandra. 6 runs of Illumina 36-42 bp single end have been performed

2010-12-01 | E-MTAB-444 | biostudies-arrayexpress

Gynandropsis gynandra

Project description:DNase- and RNA-SEQ of Gynandropsis gynandra during de-etiolation.

| PRJNA640984 | ENA

Gynandropsis gynandra de-etiolation experiment

Project description:Gynandropsis gynandra seedlings were germinated then grown in the dark for seven days on 1/2 MS medium, 22oC. Tissue samples were harvested after 0 and 6 hours exposure to WL (100 mol m2 s1) and frozen at -80oC. RNA was prepared from samples using a QIAGEN Plant RNeasy extraction kit and libraries generated using TruSeq RNA Sample v2 kit. Sequencing was performed at the Department of Biochemistry, University of Cambridge using a NextSeq500 Mid Output 150 cycle.

2016-02-06 | E-MTAB-4355 | biostudies-arrayexpress

Gynandropsis gynandra de-etiolation experiment

Project description:Gynandropsis gynandra de-etiolation experiment

| PRJEB12541 | ENA

Cleome gynandra leaf development RNA-seq

Project description:Cleome gynandra leaf development RNA-seq

| PRJEB2332 | ENA

Guard and Mesophyll cells transcriptomes in mature leaves of Gynandropsis gynandra (C4) and Tareneya hassleriana (C3).

Project description:We isolated and compared transcriptomes of GC and M from C3 T. hassleriana and C4 G. gynandra. This was achieved using laser-capture microdissection of each cell type from fixed paradermal sections. At least 2,500 cells were isolated for each replicate. RNA was extracted, amplified and subjected to RNAseq.

2016-01-10 | E-MTAB-3379 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data