Marine metagenome
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA241472 | ENA |
REPOSITORIES: ENA
Similar Datasets
Project description:Background: The soil environment is responsible for sustaining most terrestrial plant life on earth, yet we know surprisingly little about the important functions carried out by diverse microbial communities in soil. Soil microbes that inhabit the channels of decaying root systems, the detritusphere, are likely to be essential for plant growth and health, as these channels are the preferred locations of new root growth. Understanding the microbial metagenome of the detritusphere and how it responds to agricultural management such as crop rotations and soil tillage will be vital for improving global food production. Methods: The rhizosphere soils of wheat and chickpea growing under + and - decaying root were collected for metagenomics sequencing. A gene catalogue was established by de novo assembling metagenomic sequencing. Genes abundance was compared between bulk soil and rhizosphere soils under different treatments. Conclusions: The study describes the diversity and functional capacity of a high-quality soil microbial metagenome. The results demonstrate the contribution of the microbiome from decaying root in determining the metagenome of developing root systems, which is fundamental to plant growth, since roots preferentially inhabit previous root channels. Modifications in root microbial function through soil management, can ultimately govern plant health, productivity and food security.
2020-03-06 | GSE146427 | GEO
Project description:Microbial Eukaryotes from neotropical soils Metagenome
| PRJNA253711 | ENA
Project description:Uncultured eukaryotes Targeted Locus (Loci)
| PRJNA242342 | ENA
Project description:Marine eukaryotes Targeted loci environmental
| PRJNA283296 | ENA
Project description:Uncultured marine eukaryotes Targeted Locus (Loci)
| PRJNA217362 | ENA
Project description:Diversity of Microbial Eukaryotes in Sea Waters From Fildes Peninsula，King George Island, Antarctica
| PRJNA254097 | ENA
Project description:Sequencing the metatranscriptome can provide information about the response of organisms to varying environmental conditions. We present a methodology for obtaining random whole-community mRNA from a complex microbial assemblage using Pyrosequencing. The metatranscriptome had, with minimum contamination by ribosomal RNA, significant coverage of abundant transcripts, and included significantly more potentially novel proteins than in the metagenome. Keywords: metatranscriptome, mesocosm, ocean acidification
2008-02-08 | GSE10119 | GEO