Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Caulobacter vibrioides NA1000

ABSTRACT: The Global Landscape of Transcription Initiation During the Caulobacter Cell Cycle [mapping]

PROVIDER: PRJNA246338 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1273068.fastq.gz	Fastqsanger.gz
	SRR1273069.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Caulobacter vibrioides NA1000

Project description:The Global Landscape of Transcription Initiation During the Caulobacter Cell Cycle [mapping]

| PRJNA246338 | ENA

Caulobacter vibrioides NA1000

Project description:The Global Landscape of Transcription Initiation During the Caulobacter Cell Cycle [timecourse]

| PRJNA246337 | ENA

Caulobacter vibrioides

Project description:DnaA coordinates replication initiation and cell cycle transcription in Caulobacter crescentus

| PRJNA92711 | ENA

Caulobacter vibrioides NA1000

Project description:Ribosome Profiling Reveals Translational Control During the Caulobacter crescentus cell cycle

| PRJNA282016 | ENA

Caulobacter vibrioides NA1000

Project description:Expression analysis of Caulobacter crescentus NA1000 Plac::CCNA_00382 (ccrM) vs Caulobacter crescentus

| PRJNA229895 | ENA

Caulobacter vibrioides NA1000

Project description:Identification of a U/Zn/Cu responsive global regulatory two-component system in Caulobacter crescentus [ChIP-seq]

| PRJNA343783 | ENA

Caulobacter vibrioides NA1000

Project description:Expression analysis of Caulobacter crescentus NA1000 delta-CCNA_00382 (ccrM) [DccrM] vs Caulobacter crescentus NA1000 wild type [WT]

| PRJNA227736 | ENA

Expression analysis of Caulobacter crescentus NA1000 delta-CCNA_00382 (ccrM) [DccrM] vs Caulobacter crescentus NA1000 wild type [WT]

Project description:Investigation of whole genome gene expression level changes in a Caulobacter crescentus NA1000 delta-CCNA_00382 (ccrM) mutant, compared to the wild-type strain. The mutations engineered into this strain render it incapable of methylating its genome on the adenine at GANTC motifs. References for strains : WT: Marks, M.E., Castro-Rojas, C.M., Teiling, C., Du, L., Kapatral, V., Walunas, T.L. and Crosson, S. (2010) The genetic basis of laboratory adaptation in Caulobacter crescentus. J Bacteriol, 192, 3678-3688; Collier, J. and Shapiro, L. (2009) Feedback control of DnaA-mediated replication initiation by replisome-associated HdaA protein in Caulobacter. J Bacteriol, 191, 5706-5716. DccrM: Gonzalez, D. and Collier, J. (2013) DNA methylation by CcrM activates the transcription of two genes required for the division of Caulobacter crescentus. Mol Microbiol, 88, 203-218. A six chip study using total RNA recovered from three separate wild-type cultures of Caulobacter crescentus NA1000 and three separate cultures of a triple mutant strain, Caulobacter crescentus NA1000 delta-CCNA_00382 (ccrM), in which the ccrM gene coding for a DNA methyltransferase methylating the adenine in GANTC motifs is truncated and its product inactive. Each chip measures the expression level of 3933 genes from Caulobacter crescentus NA1000 with 3 probes per gene and with three-fold technical redundancy.

2014-01-08 | E-GEOD-52375 | biostudies-arrayexpress

Expression analysis of Caulobacter crescentus NA1000 delta-CCNA_00382 (ccrM) [DccrM] vs Caulobacter crescentus NA1000 wild type [WT]

2014-01-08 | GSE52375 | GEO

Caulobacter vibrioides NA1000

Project description:CCr cell cycle analysis

| PRJDB9745 | ENA