Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Shewanella mangrovi strain:YQH10

ABSTRACT: Shewanella mangrovi strain:YQH10 Genome sequencing and assembly

PROVIDER: PRJNA253757 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	JPEO01.dat.gz	Other
	JPEO01.fasta.gz	Fasta.gz
	JPEO01.master.dat	Other
	JPEO01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Shewanella oneidensis MR-1 etrA deletion mutant strain expression profiling determines fine-tuning regulatory role in anaerobic metabolism

Project description:Comparisson of expression profiling of a etrA deletion mutant strain (experimental sample) with that of the wild type Shewanella oneidensis MR-1 strain to assess global direct/indirect genetic regulation EtrA in Shewanella oneidensis MR-1 shares 73.6% and 50.8% amino acid sequence identity with the oxygen-sensing regulator Fnr in E. coli and Anr in Pseudomonas aeruginosa, respectively; however, its regulatory role of anaerobic metabolism in Shewanella spp. is complex and not well understood. Whole-genome expression profiling using a etrA gene deletion mutant as the experimental sample and the wild type strain as the reference, determine that EtrA fine-tunes the expression of genes involved in various anaerobic metabolic pathways, including nitrate, fumarate and dimethyl sulfoxide reduction. Moreover, genes involved in prophage activation and and genes implicated in aerobic metabolism were also differentially expressed. In contrast to previous studies that attributed a minor regulatory role to EtrA in Shewanella spp., this study demonstrates that EtrA acts as a global transcriptional regulator and cofers physiological advantages to the strain under certain growth conditions.

2011-01-29 | GSE26935 | GEO

Transcriptional targets of Shewanella oneidensis HnoC (SO_2540)

Project description:To identify the transcriptional targets of the DNA-binding response regulator HnoC (SO_2540), mRNA transcript levels in Shewanella oneidensis were measured using whole genome microarray analysis. Transcript levels were compared between WT Shewanella oneidensis and a hnoC deletion strain.

2013-11-01 | GSE44689 | GEO

Idiomarina mangrovi strain:ZQ330

Project description:Idiomarina mangrovi strain:ZQ330 Genome sequencing and assembly

| PRJNA504364 | ENA

Acuticoccus mangrovi strain:2012

Project description:Acuticoccus mangrovi strain:2012 Genome sequencing and assembly

| PRJNA685012 | ENA

Gordonia mangrovi strain:HNM0687

Project description:Gordonia mangrovi strain:HNM0687 Genome sequencing and assembly

| PRJNA588129 | ENA

Pararhizobium mangrovi strain:BGMRC6574

Project description:Pararhizobium mangrovi strain:BGMRC6574 Genome sequencing and assembly

| PRJNA549580 | ENA

Pontibacter mangrovi strain:HB172049

Project description:Pontibacter mangrovi strain:HB172049 Genome sequencing and assembly

| PRJNA549131 | ENA

Rheinheimera mangrovi strain:LHK132

Project description:Rheinheimera mangrovi strain:LHK132 Genome sequencing

| PRJNA510894 | ENA

Thalassobius mangrovi strain:GS-10

Project description:Thalassobius mangrovi strain:GS-10 Genome sequencing and assembly

| PRJNA597691 | ENA

Microbacterium mangrovi strain:MUSC 115

Project description:Microbacterium mangrovi strain:MUSC 115 Genome sequencing and assembly

| PRJNA261100 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data