Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Shewanella algae strain:C6G3

ABSTRACT: Shewanella algae strain:C6G3 Genome sequencing and assembly

PROVIDER: PRJNA255462 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	JPMA01.dat.gz	Other
	JPMA01.fasta.gz	Fasta.gz
	JPMA01.master.dat	Other
	JPMA01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Reduction of alternative electron acceptors drives biofilm formation in Shewanella algae

Project description:Shewanella spp. possess a broad respiratory versatility, which contributes to the occupation of hypoxic/anoxic environmental or host-associated niches. Here we observed a strain-specific induction of biofilm formation in response to supplementation with the anaerobic electron acceptors dimethyl sulfoxide (DMSO) and nitrate in a panel of Shewanella algae isolates. The respiration-driven biofilm response is not observed in DMSO and nitrate reductase deletion mutants of the type strain S. algae CECT 5071, and can be restored upon complementation with the corresponding reductase operon(s) but not by an operon containing a catalytically inactive nitrate reductase. The distinct transcriptional changes, proportional to the effect of these compounds on biofilm formation, include cyclic di-GMP (c-di-GMP) turnover genes. In support, ectopic expression of the c-di-GMP phosphodiesterase YhjH of Salmonella Typhimurium but not its catalytically inactive variant decreased biofilm formation. The respiration-dependent biofilm response of S. algae may permit differential colonization of environmental or host niches.

2020-12-05 | GSE133627 | GEO

Shewanella algae

Project description:Shewanella algae Genome sequencing and assembly

| PRJNA725326 | ENA

Shewanella algae

Project description:Shewanella algae Genome sequencing

| PRJNA240136 | ENA

Shewanella algae strain:CCU101

Project description:Shewanella algae strain:CCU101 Genome sequencing and assembly

| PRJNA356098 | ENA

Shewanella algae strain:Sh392

Project description:Shewanella algae strain:Sh392 Genome sequencing and assembly