Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Camelus dromedarius breed:African

ABSTRACT: Camelus dromedarius breed:African Genome sequencing and assembly

PROVIDER: PRJNA269274 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1693821_1.fastq.gz	Fastqsanger.gz
	SRR1693821_2.fastq.gz	Fastqsanger.gz
	SRR1693815_1.fastq.gz	Fastqsanger.gz
	SRR1693815_2.fastq.gz	Fastqsanger.gz
	SRR1693816_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 19

Similar Datasets

Camelus dromedarius breed:Arabia

Project description:Camelus dromedarius breed:Arabia Genome sequencing and assembly

| PRJNA234474 | ENA

Camelus dromedarius breed:Trodi

Project description:Camelus dromedarius breed:Trodi Raw sequence reads

| PRJNA416700 | ENA

Camelus dromedarius breed:Targui

Project description:Camelus dromedarius Genome sequencing

| PRJNA310822 | ENA

Camelus dromedarius

Project description:Camelus dromedarius genome sequencing

| PRJNA62507 | ENA

Camelus dromedarius

Project description:Camelus dromedarius Raw sequence reads

| PRJNA317727 | ENA

Camelus dromedarius isolate:YaD | breed:Yazdi

Project description:Camelus dromedarius isolate:YaD | breed:Yazdi Raw sequence reads

| PRJNA416695 | ENA

Camelus dromedarius

Project description:Camelus dromedarius Transcriptome or Gene expression

| PRJNA82161 | ENA

Camelus dromedarius isolate:JPW13

Project description:Camelus dromedarius isolate:JPW13 Genome sequencing and assembly

| PRJNA693401 | ENA

Proteomics of the Milk Fat Globule Membrane from Camelus dromedarius

Project description:Camel milk is widely characterized with regard to caseins and whey proteins. However, in camelids, close to nothing is known about the Milk Fat Globule Membrane (MFGM), the membrane surrounding fat globules in milk. The purpose of this study was thus to identify MFGM proteins from Camelus dromedarius milk. Major MFGM proteins (namely, fatty acid synthase, xanthine oxidase, butyrophilin, lactadherin, and adipophilin) already evidenced in cow milk were identified in camel milk using mass spectrometry. In addition, a 1D-LC-MS/MS approach led us to identify 322 functional groups of proteins associated with the camel Milk Fat Globule Membrane. We hope that these findings will contribute to a better characterization of camel milk and to an improved understanding of lipid droplet formation in the mammary epithelial cell.

2013-02-05 | PXD000059 | Pride

Multiomic analysis of the Arabian camel (Camelus dromedarius) kidney reveals a role for cholesterol in water conservation

Project description:The one-humped Arabian camel (Camelus dromedarius) is the most important livestock animal in arid and semi-arid regions and continues to provide basic necessities to millions of people. In the current context of global warming, there is renewed interest in the adaptive mechanisms that enable camelids to survive in arid conditions. Recent investigations described genomic signatures that revealed evolutionary adaptations to desert environments. We now present a comprehensive catalogue of the transcriptomes and proteomes of the dromedary kidney and describe how the gene expression profiles of Differentially Expressed Genes (DEGs) are modulated as a consequence of chronic dehydration and subsequent acute rehydration. We performed RNAseq and quantification of peptides in samples from 15 dromedaries (5 controls, 5 dehydrated and 5 rehydrated). Gene Ontology analyses suggested an enrichment of the cholesterol biosynthetic process and an overrepresentation of categories related to ion transmembrane transport in the camel kidney, and RTN analyses confirmed alterations in the transcriptional machinery involved in cholesterol synthesis. These data were validated by RT-qPCR. Based on our hypothesis of a role for cholesterol during dehydration, we identified DEGs with roles in the countercurrent multiplication process which are affected by changes in the level of cholesterol. Thus, we further validated differentially expressed genes with known roles in water conservation which are affected by changes in cholesterol levels. Our datasets suggest that suppression of cholesterol biosynthesis may facilitate water retention in the kidney by indirectly facilitating the AQP2-mediated water reabsorption.

2021-06-18 | GSE173683 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data